Protein–RNA interactions for Protein: Q99829

CPNE1, Copine-1, humanhuman

Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1Q99829 AL139327.4-201ENST00000612362 153 ntBASIC17.62■□□□□ 0.41
CPNE1Q99829 AC005363.2-201ENST00000618631 242 ntBASIC17.62■□□□□ 0.41
CPNE1Q99829 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.62■□□□□ 0.41
CPNE1Q99829 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
CPNE1Q99829 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
CPNE1Q99829 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
CPNE1Q99829 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CPNE1Q99829 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CPNE1Q99829 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CPNE1Q99829 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
CPNE1Q99829 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CPNE1Q99829 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CPNE1Q99829 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CPNE1Q99829 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CPNE1Q99829 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CPNE1Q99829 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CPNE1Q99829 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
CPNE1Q99829 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
CPNE1Q99829 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
CPNE1Q99829 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CPNE1Q99829 TERF1P1-201ENST00000311003 1181 ntBASIC17.61■□□□□ 0.41
CPNE1Q99829 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
CPNE1Q99829 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CPNE1Q99829 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.61■□□□□ 0.41
CPNE1Q99829 AC117947.1-201ENST00000427448 529 ntBASIC17.61■□□□□ 0.41
CPNE1Q99829 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CPNE1Q99829 AC012306.2-201ENST00000609350 630 ntBASIC17.61■□□□□ 0.41
CPNE1Q99829 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
CPNE1Q99829 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CPNE1Q99829 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.61■□□□□ 0.41
CPNE1Q99829 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CPNE1Q99829 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CPNE1Q99829 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CPNE1Q99829 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CPNE1Q99829 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
CPNE1Q99829 AC116353.5-201ENST00000638148 1699 ntBASIC17.61■□□□□ 0.41
CPNE1Q99829 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CPNE1Q99829 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CPNE1Q99829 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC17.6■□□□□ 0.41
CPNE1Q99829 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.6■□□□□ 0.41
CPNE1Q99829 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CPNE1Q99829 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CPNE1Q99829 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.6■□□□□ 0.41
CPNE1Q99829 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CPNE1Q99829 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.6■□□□□ 0.41
CPNE1Q99829 HBZP1-201ENST00000354915 429 ntBASIC17.6■□□□□ 0.41
CPNE1Q99829 GXYLT1P3-201ENST00000453058 1193 ntBASIC17.6■□□□□ 0.41
CPNE1Q99829 AL359075.1-203ENST00000462729 1002 ntBASIC17.6■□□□□ 0.41
CPNE1Q99829 AC002558.1-201ENST00000488906 803 ntBASIC17.6■□□□□ 0.41
CPNE1Q99829 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CPNE1Q99829 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CPNE1Q99829 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.6■□□□□ 0.41
CPNE1Q99829 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.6■□□□□ 0.41
CPNE1Q99829 AC097493.4-201ENST00000641197 219 ntBASIC17.6■□□□□ 0.41
CPNE1Q99829 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CPNE1Q99829 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CPNE1Q99829 ADM-208ENST00000534464 1640 ntTSL 2 BASIC17.6■□□□□ 0.41
CPNE1Q99829 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CPNE1Q99829 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CPNE1Q99829 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.6■□□□□ 0.41
CPNE1Q99829 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC17.6■□□□□ 0.41
CPNE1Q99829 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC17.6■□□□□ 0.41
CPNE1Q99829 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.6■□□□□ 0.41
CPNE1Q99829 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CPNE1Q99829 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CPNE1Q99829 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CPNE1Q99829 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
CPNE1Q99829 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CPNE1Q99829 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.59■□□□□ 0.41
CPNE1Q99829 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC17.59■□□□□ 0.41
CPNE1Q99829 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.59■□□□□ 0.41
CPNE1Q99829 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
CPNE1Q99829 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.59■□□□□ 0.41
CPNE1Q99829 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC17.59■□□□□ 0.41
CPNE1Q99829 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CPNE1Q99829 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.59■□□□□ 0.41
CPNE1Q99829 AC073508.3-201ENST00000619697 1419 ntBASIC17.59■□□□□ 0.41
CPNE1Q99829 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CPNE1Q99829 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CPNE1Q99829 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.59■□□□□ 0.41
CPNE1Q99829 AC097374.2-201ENST00000618617 1306 ntBASIC17.59■□□□□ 0.41
CPNE1Q99829 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CPNE1Q99829 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC17.59■□□□□ 0.41
CPNE1Q99829 HOMER2P1-201ENST00000455653 964 ntBASIC17.59■□□□□ 0.41
CPNE1Q99829 AC005332.3-201ENST00000589904 676 ntBASIC17.59■□□□□ 0.41
CPNE1Q99829 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17.59■□□□□ 0.41
CPNE1Q99829 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC17.59■□□□□ 0.41
CPNE1Q99829 AC133561.5-201ENST00000635547 218 ntBASIC17.59■□□□□ 0.41
CPNE1Q99829 AC066615.1-201ENST00000640911 628 ntBASIC17.59■□□□□ 0.41
CPNE1Q99829 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CPNE1Q99829 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CPNE1Q99829 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CPNE1Q99829 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CPNE1Q99829 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CPNE1Q99829 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CPNE1Q99829 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.59■□□□□ 0.41
CPNE1Q99829 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
CPNE1Q99829 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
CPNE1Q99829 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CPNE1Q99829 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms