Protein–RNA interactions for Protein: Q5T3J3

LRIF1, Ligand-dependent nuclear receptor-interacting factor 1, humanhuman

Predictions only

Length 769 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1Q5T3J3 DUT-205ENST00000558813 769 ntTSL 2 BASIC16.61■□□□□ 0.25
LRIF1Q5T3J3 NAA38-203ENST00000575071 553 ntTSL 2 BASIC16.61■□□□□ 0.25
LRIF1Q5T3J3 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC16.61■□□□□ 0.25
LRIF1Q5T3J3 AC140113.3-201ENST00000605663 199 ntBASIC16.61■□□□□ 0.25
LRIF1Q5T3J3 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
LRIF1Q5T3J3 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LRIF1Q5T3J3 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LRIF1Q5T3J3 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LRIF1Q5T3J3 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
LRIF1Q5T3J3 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LRIF1Q5T3J3 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.61■□□□□ 0.25
LRIF1Q5T3J3 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LRIF1Q5T3J3 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LRIF1Q5T3J3 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LRIF1Q5T3J3 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
LRIF1Q5T3J3 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
LRIF1Q5T3J3 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.61■□□□□ 0.25
LRIF1Q5T3J3 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 LINC02012-201ENST00000608206 1725 ntBASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 SLC25A3P1-201ENST00000443844 931 ntBASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 AC046185.3-201ENST00000623228 1824 ntBASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 AL353692.3-201ENST00000407031 1396 ntBASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC16.6■□□□□ 0.25
LRIF1Q5T3J3 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 ANKRD20A18P-201ENST00000359341 492 ntBASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 MIR662-201ENST00000384847 95 ntBASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 FAM8A6P-201ENST00000407496 1135 ntBASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 COX11P1-201ENST00000489116 835 ntBASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 TK1-204ENST00000590430 683 ntTSL 3 BASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 AC097374.2-201ENST00000618617 1306 ntBASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 PC-208ENST00000529047 1607 ntTSL 3 BASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 ADM-208ENST00000534464 1640 ntTSL 2 BASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LRIF1Q5T3J3 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms