Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
COL4A1P02462 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC21.36■■□□□ 1.01
COL4A1P02462 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL4A1P02462 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
COL4A1P02462 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL4A1P02462 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
COL4A1P02462 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC21.35■■□□□ 1.01
COL4A1P02462 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL4A1P02462 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL4A1P02462 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL4A1P02462 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL4A1P02462 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC21.35■■□□□ 1.01
COL4A1P02462 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC21.35■■□□□ 1.01
COL4A1P02462 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC21.35■■□□□ 1.01
COL4A1P02462 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
COL4A1P02462 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
COL4A1P02462 TSEN15P1-201ENST00000423257 515 ntBASIC21.35■■□□□ 1.01
COL4A1P02462 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
COL4A1P02462 AP000344.2-201ENST00000512987 629 ntBASIC21.35■■□□□ 1.01
COL4A1P02462 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC21.35■■□□□ 1.01
COL4A1P02462 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
COL4A1P02462 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC21.35■■□□□ 1.01
COL4A1P02462 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC21.35■■□□□ 1.01
COL4A1P02462 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL4A1P02462 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC21.35■■□□□ 1.01
COL4A1P02462 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
COL4A1P02462 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC21.35■■□□□ 1.01
COL4A1P02462 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
COL4A1P02462 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
COL4A1P02462 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC21.34■■□□□ 1.01
COL4A1P02462 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC21.34■■□□□ 1.01
COL4A1P02462 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL4A1P02462 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC21.34■■□□□ 1.01
COL4A1P02462 CXCL1P1-201ENST00000502804 216 ntBASIC21.34■■□□□ 1.01
COL4A1P02462 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC21.34■■□□□ 1.01
COL4A1P02462 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL4A1P02462 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC21.34■■□□□ 1.01
COL4A1P02462 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
COL4A1P02462 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
COL4A1P02462 GGTLC5P-201ENST00000617623 998 ntBASIC21.34■■□□□ 1.01
COL4A1P02462 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL4A1P02462 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
COL4A1P02462 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL4A1P02462 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL4A1P02462 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL4A1P02462 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL4A1P02462 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
COL4A1P02462 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC21.34■■□□□ 1.01
COL4A1P02462 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL4A1P02462 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
COL4A1P02462 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL4A1P02462 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
COL4A1P02462 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC21.34■■□□□ 1.01
COL4A1P02462 SLC25A1P3-201ENST00000395415 828 ntBASIC21.34■■□□□ 1.01
COL4A1P02462 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC21.34■■□□□ 1.01
COL4A1P02462 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC21.34■■□□□ 1.01
COL4A1P02462 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC21.34■■□□□ 1.01
COL4A1P02462 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL4A1P02462 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC21.33■■□□□ 1.01
COL4A1P02462 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
COL4A1P02462 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
COL4A1P02462 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC21.33■■□□□ 1.01
COL4A1P02462 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
COL4A1P02462 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC21.33■■□□□ 1
COL4A1P02462 MYCLP1-201ENST00000372451 1075 ntBASIC21.33■■□□□ 1
COL4A1P02462 AC004461.1-201ENST00000412461 403 ntBASIC21.33■■□□□ 1
COL4A1P02462 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
COL4A1P02462 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC21.33■■□□□ 1
COL4A1P02462 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
COL4A1P02462 AC093520.2-201ENST00000561830 333 ntBASIC21.33■■□□□ 1
COL4A1P02462 MNT-208ENST00000575394 606 ntTSL 4 BASIC21.33■■□□□ 1
COL4A1P02462 AC022145.2-201ENST00000598203 171 ntBASIC21.33■■□□□ 1
COL4A1P02462 AL513210.1-201ENST00000629608 234 ntBASIC21.33■■□□□ 1
COL4A1P02462 AC079781.4-201ENST00000641908 219 ntBASIC21.33■■□□□ 1
COL4A1P02462 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
COL4A1P02462 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
COL4A1P02462 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
COL4A1P02462 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC21.33■■□□□ 1
COL4A1P02462 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
COL4A1P02462 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
COL4A1P02462 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC21.33■■□□□ 1
COL4A1P02462 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
COL4A1P02462 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL4A1P02462 PI4KAP1-204ENST00000612579 1703 ntBASIC21.32■■□□□ 1
COL4A1P02462 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
COL4A1P02462 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC21.32■■□□□ 1
COL4A1P02462 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC21.32■■□□□ 1
COL4A1P02462 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC21.32■■□□□ 1
COL4A1P02462 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
COL4A1P02462 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL4A1P02462 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC21.32■■□□□ 1
COL4A1P02462 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC21.32■■□□□ 1
COL4A1P02462 PON3-203ENST00000427422 894 ntTSL 3 BASIC21.32■■□□□ 1
COL4A1P02462 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC21.32■■□□□ 1
COL4A1P02462 SMN2-210ENST00000511812 867 ntTSL 2 BASIC21.32■■□□□ 1
COL4A1P02462 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC21.32■■□□□ 1
COL4A1P02462 IGHV3OR16-6-201ENST00000568775 360 ntBASIC21.32■■□□□ 1
COL4A1P02462 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL4A1P02462 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC21.32■■□□□ 1
COL4A1P02462 MED16-214ENST00000617672 554 ntTSL 5 BASIC21.32■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms