Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 AC022211.2-201ENST00000585075 2527 ntBASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 AD000864.1-201ENST00000624076 2295 ntBASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 COPE-203ENST00000351079 907 ntTSL 2 BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 BX664615.1-201ENST00000443558 458 ntBASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 SNX5-210ENST00000481323 562 ntTSL 3 BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 AP003733.1-201ENST00000491725 852 ntBASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 AC112698.1-201ENST00000510299 916 ntBASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 ZNF444P1-201ENST00000559497 298 ntBASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CPSF4LA6NMK7 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.27■□□□□ 0.2
CPSF4LA6NMK7 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
CPSF4LA6NMK7 AC099398.1-201ENST00000567919 2776 ntBASIC16.27■□□□□ 0.2
CPSF4LA6NMK7 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.27■□□□□ 0.2
CPSF4LA6NMK7 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
CPSF4LA6NMK7 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CPSF4LA6NMK7 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
CPSF4LA6NMK7 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
CPSF4LA6NMK7 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CPSF4LA6NMK7 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CPSF4LA6NMK7 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CPSF4LA6NMK7 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
CPSF4LA6NMK7 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
CPSF4LA6NMK7 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CPSF4LA6NMK7 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
CPSF4LA6NMK7 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CPSF4LA6NMK7 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.27■□□□□ 0.2
CPSF4LA6NMK7 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.2
CPSF4LA6NMK7 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.2
CPSF4LA6NMK7 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CPSF4LA6NMK7 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CPSF4LA6NMK7 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CPSF4LA6NMK7 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CPSF4LA6NMK7 AC117947.1-201ENST00000427448 529 ntBASIC16.27■□□□□ 0.2
CPSF4LA6NMK7 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC16.27■□□□□ 0.2
CPSF4LA6NMK7 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CPSF4LA6NMK7 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
CPSF4LA6NMK7 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.27■□□□□ 0.2
CPSF4LA6NMK7 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CPSF4LA6NMK7 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CPSF4LA6NMK7 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
CPSF4LA6NMK7 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CPSF4LA6NMK7 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CPSF4LA6NMK7 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC16.27■□□□□ 0.19
CPSF4LA6NMK7 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CPSF4LA6NMK7 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CPSF4LA6NMK7 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
CPSF4LA6NMK7 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CPSF4LA6NMK7 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC16.27■□□□□ 0.19
CPSF4LA6NMK7 NF2-208ENST00000403435 2568 ntTSL 5 BASIC16.27■□□□□ 0.19
CPSF4LA6NMK7 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CPSF4LA6NMK7 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CPSF4LA6NMK7 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
CPSF4LA6NMK7 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.26■□□□□ 0.19
CPSF4LA6NMK7 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC16.26■□□□□ 0.19
CPSF4LA6NMK7 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.26■□□□□ 0.19
CPSF4LA6NMK7 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms