Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SF3A1Q15459 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
SF3A1Q15459 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC20.4■□□□□ 0.86
SF3A1Q15459 PPOX-214ENST00000535223 664 ntTSL 3 BASIC20.4■□□□□ 0.86
SF3A1Q15459 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC20.4■□□□□ 0.86
SF3A1Q15459 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC20.4■□□□□ 0.86
SF3A1Q15459 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC20.4■□□□□ 0.86
SF3A1Q15459 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC20.4■□□□□ 0.86
SF3A1Q15459 LINC00304-203ENST00000565008 1864 ntBASIC20.4■□□□□ 0.86
SF3A1Q15459 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC20.4■□□□□ 0.86
SF3A1Q15459 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
SF3A1Q15459 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
SF3A1Q15459 FGF14-AS2-201ENST00000606448 1074 ntBASIC20.4■□□□□ 0.86
SF3A1Q15459 AL138688.1-201ENST00000624851 1594 ntBASIC20.4■□□□□ 0.86
SF3A1Q15459 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
SF3A1Q15459 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC20.4■□□□□ 0.86
SF3A1Q15459 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SF3A1Q15459 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
SF3A1Q15459 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SF3A1Q15459 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC20.4■□□□□ 0.86
SF3A1Q15459 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC20.39■□□□□ 0.86
SF3A1Q15459 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
SF3A1Q15459 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
SF3A1Q15459 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
SF3A1Q15459 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC20.39■□□□□ 0.86
SF3A1Q15459 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
SF3A1Q15459 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC20.39■□□□□ 0.86
SF3A1Q15459 REXO1L11P-201ENST00000620964 1927 ntBASIC20.39■□□□□ 0.86
SF3A1Q15459 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SF3A1Q15459 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC20.39■□□□□ 0.86
SF3A1Q15459 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
SF3A1Q15459 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
SF3A1Q15459 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SF3A1Q15459 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC20.39■□□□□ 0.85
SF3A1Q15459 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC20.39■□□□□ 0.85
SF3A1Q15459 AP003733.1-201ENST00000491725 852 ntBASIC20.39■□□□□ 0.85
SF3A1Q15459 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC20.39■□□□□ 0.85
SF3A1Q15459 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SF3A1Q15459 ZNF444P1-201ENST00000559497 298 ntBASIC20.39■□□□□ 0.85
SF3A1Q15459 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SF3A1Q15459 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC20.39■□□□□ 0.85
SF3A1Q15459 AC009154.2-201ENST00000621177 724 ntBASIC20.39■□□□□ 0.85
SF3A1Q15459 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC20.39■□□□□ 0.85
SF3A1Q15459 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SF3A1Q15459 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SF3A1Q15459 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
SF3A1Q15459 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SF3A1Q15459 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
SF3A1Q15459 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
SF3A1Q15459 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SF3A1Q15459 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SF3A1Q15459 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SF3A1Q15459 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SF3A1Q15459 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC20.38■□□□□ 0.85
SF3A1Q15459 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC20.38■□□□□ 0.85
SF3A1Q15459 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SF3A1Q15459 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
SF3A1Q15459 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
SF3A1Q15459 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SF3A1Q15459 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC20.38■□□□□ 0.85
SF3A1Q15459 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SF3A1Q15459 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SF3A1Q15459 TSPY12P-201ENST00000421279 868 ntBASIC20.38■□□□□ 0.85
SF3A1Q15459 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC20.38■□□□□ 0.85
SF3A1Q15459 VENTXP5-201ENST00000523979 775 ntBASIC20.38■□□□□ 0.85
SF3A1Q15459 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC20.38■□□□□ 0.85
SF3A1Q15459 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC20.38■□□□□ 0.85
SF3A1Q15459 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC20.38■□□□□ 0.85
SF3A1Q15459 GXYLT1P4-201ENST00000613576 1192 ntBASIC20.38■□□□□ 0.85
SF3A1Q15459 SPEG-225ENST00000617028 815 ntTSL 5 BASIC20.38■□□□□ 0.85
SF3A1Q15459 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
SF3A1Q15459 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
SF3A1Q15459 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SF3A1Q15459 PRORSD1P-202ENST00000563365 2154 ntBASIC20.38■□□□□ 0.85
SF3A1Q15459 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SF3A1Q15459 HLA-J-201ENST00000462773 1622 ntBASIC20.38■□□□□ 0.85
SF3A1Q15459 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SF3A1Q15459 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
SF3A1Q15459 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC20.37■□□□□ 0.85
SF3A1Q15459 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SF3A1Q15459 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC20.37■□□□□ 0.85
SF3A1Q15459 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SF3A1Q15459 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SF3A1Q15459 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SF3A1Q15459 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC20.37■□□□□ 0.85
SF3A1Q15459 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SF3A1Q15459 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC20.37■□□□□ 0.85
SF3A1Q15459 BOC-212ENST00000485230 2173 ntTSL 2 BASIC20.37■□□□□ 0.85
SF3A1Q15459 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SF3A1Q15459 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SF3A1Q15459 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC20.37■□□□□ 0.85
SF3A1Q15459 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC20.37■□□□□ 0.85
SF3A1Q15459 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SF3A1Q15459 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC20.37■□□□□ 0.85
SF3A1Q15459 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC20.37■□□□□ 0.85
SF3A1Q15459 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC20.37■□□□□ 0.85
SF3A1Q15459 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC20.37■□□□□ 0.85
SF3A1Q15459 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SF3A1Q15459 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC20.37■□□□□ 0.85
SF3A1Q15459 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms