Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
PCDH1Q08174 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PCDH1Q08174 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.02■□□□□ 0.32
PCDH1Q08174 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC17.02■□□□□ 0.32
PCDH1Q08174 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC17.02■□□□□ 0.32
PCDH1Q08174 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PCDH1Q08174 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
PCDH1Q08174 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PCDH1Q08174 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.02■□□□□ 0.32
PCDH1Q08174 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.02■□□□□ 0.32
PCDH1Q08174 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.02■□□□□ 0.32
PCDH1Q08174 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.32
PCDH1Q08174 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PCDH1Q08174 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PCDH1Q08174 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
PCDH1Q08174 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PCDH1Q08174 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PCDH1Q08174 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PCDH1Q08174 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC17.02■□□□□ 0.32
PCDH1Q08174 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC17.02■□□□□ 0.32
PCDH1Q08174 BX276092.5-203ENST00000456199 560 ntBASIC17.02■□□□□ 0.32
PCDH1Q08174 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PCDH1Q08174 CD320-202ENST00000537716 1119 ntTSL 2 BASIC17.02■□□□□ 0.32
PCDH1Q08174 AC011840.4-201ENST00000578471 627 ntBASIC17.02■□□□□ 0.32
PCDH1Q08174 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
PCDH1Q08174 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC17.02■□□□□ 0.32
PCDH1Q08174 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC17.02■□□□□ 0.32
PCDH1Q08174 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PCDH1Q08174 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
PCDH1Q08174 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.02■□□□□ 0.32
PCDH1Q08174 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.32
PCDH1Q08174 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
PCDH1Q08174 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.02■□□□□ 0.31
PCDH1Q08174 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.02■□□□□ 0.31
PCDH1Q08174 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
PCDH1Q08174 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.31
PCDH1Q08174 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
PCDH1Q08174 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.02■□□□□ 0.31
PCDH1Q08174 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC17.02■□□□□ 0.31
PCDH1Q08174 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDH1Q08174 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PCDH1Q08174 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDH1Q08174 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
PCDH1Q08174 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PCDH1Q08174 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC17.01■□□□□ 0.31
PCDH1Q08174 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
PCDH1Q08174 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PCDH1Q08174 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDH1Q08174 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDH1Q08174 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDH1Q08174 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDH1Q08174 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC17.01■□□□□ 0.31
PCDH1Q08174 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDH1Q08174 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PCDH1Q08174 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC17.01■□□□□ 0.31
PCDH1Q08174 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC17.01■□□□□ 0.31
PCDH1Q08174 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC17.01■□□□□ 0.31
PCDH1Q08174 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC17.01■□□□□ 0.31
PCDH1Q08174 RMI2-205ENST00000576027 818 ntTSL 2 BASIC17.01■□□□□ 0.31
PCDH1Q08174 DBP-204ENST00000599385 709 ntTSL 3 BASIC17.01■□□□□ 0.31
PCDH1Q08174 AC019129.2-201ENST00000609837 1235 ntBASIC17.01■□□□□ 0.31
PCDH1Q08174 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
PCDH1Q08174 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDH1Q08174 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC17.01■□□□□ 0.31
PCDH1Q08174 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDH1Q08174 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDH1Q08174 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
PCDH1Q08174 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
PCDH1Q08174 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.01■□□□□ 0.31
PCDH1Q08174 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDH1Q08174 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDH1Q08174 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17■□□□□ 0.31
PCDH1Q08174 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17■□□□□ 0.31
PCDH1Q08174 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17■□□□□ 0.31
PCDH1Q08174 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
PCDH1Q08174 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PCDH1Q08174 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC17■□□□□ 0.31
PCDH1Q08174 AC139713.2-201ENST00000641328 2723 ntBASIC17■□□□□ 0.31
PCDH1Q08174 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
PCDH1Q08174 PC-208ENST00000529047 1607 ntTSL 3 BASIC17■□□□□ 0.31
PCDH1Q08174 AL023806.1-201ENST00000603994 1649 ntBASIC17■□□□□ 0.31
PCDH1Q08174 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC17■□□□□ 0.31
PCDH1Q08174 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
PCDH1Q08174 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PCDH1Q08174 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PCDH1Q08174 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PCDH1Q08174 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
PCDH1Q08174 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC17■□□□□ 0.31
PCDH1Q08174 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC17■□□□□ 0.31
PCDH1Q08174 DRAXINP1-201ENST00000437611 948 ntBASIC17■□□□□ 0.31
PCDH1Q08174 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC17■□□□□ 0.31
PCDH1Q08174 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC17■□□□□ 0.31
PCDH1Q08174 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC17■□□□□ 0.31
PCDH1Q08174 TMED1-207ENST00000591695 809 ntTSL 5 BASIC17■□□□□ 0.31
PCDH1Q08174 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
PCDH1Q08174 AL139327.4-201ENST00000612362 153 ntBASIC17■□□□□ 0.31
PCDH1Q08174 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC17■□□□□ 0.31
PCDH1Q08174 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
PCDH1Q08174 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
PCDH1Q08174 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms