Protein–RNA interactions for Protein: P55290

CDH13, Cadherin-13, humanhuman

Predictions only

Length 713 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13P55290 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDH13P55290 AC073508.3-201ENST00000619697 1419 ntBASIC17.28■□□□□ 0.36
CDH13P55290 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDH13P55290 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CDH13P55290 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC17.28■□□□□ 0.36
CDH13P55290 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC17.28■□□□□ 0.36
CDH13P55290 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CDH13P55290 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC17.27■□□□□ 0.36
CDH13P55290 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
CDH13P55290 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.36
CDH13P55290 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CDH13P55290 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
CDH13P55290 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CDH13P55290 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CDH13P55290 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC17.27■□□□□ 0.36
CDH13P55290 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC17.27■□□□□ 0.36
CDH13P55290 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CDH13P55290 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CDH13P55290 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.36
CDH13P55290 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.36
CDH13P55290 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CDH13P55290 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
CDH13P55290 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CDH13P55290 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CDH13P55290 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CDH13P55290 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CDH13P55290 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.27■□□□□ 0.36
CDH13P55290 AP003733.1-201ENST00000491725 852 ntBASIC17.27■□□□□ 0.36
CDH13P55290 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC17.27■□□□□ 0.36
CDH13P55290 AC097493.4-201ENST00000641197 219 ntBASIC17.27■□□□□ 0.36
CDH13P55290 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CDH13P55290 AC011676.5-201ENST00000624864 2660 ntBASIC17.27■□□□□ 0.35
CDH13P55290 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC17.27■□□□□ 0.35
CDH13P55290 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CDH13P55290 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.27■□□□□ 0.35
CDH13P55290 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CDH13P55290 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CDH13P55290 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
CDH13P55290 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CDH13P55290 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CDH13P55290 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
CDH13P55290 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC17.26■□□□□ 0.35
CDH13P55290 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH13P55290 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CDH13P55290 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH13P55290 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC17.26■□□□□ 0.35
CDH13P55290 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.26■□□□□ 0.35
CDH13P55290 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CDH13P55290 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CDH13P55290 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH13P55290 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CDH13P55290 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
CDH13P55290 NKILA-202ENST00000614771 2598 ntBASIC17.26■□□□□ 0.35
CDH13P55290 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH13P55290 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CDH13P55290 IGHGP-201ENST00000390555 1178 ntBASIC17.26■□□□□ 0.35
CDH13P55290 AC005521.1-201ENST00000393351 872 ntBASIC17.26■□□□□ 0.35
CDH13P55290 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH13P55290 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
CDH13P55290 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CDH13P55290 KRT18P38-201ENST00000449496 1282 ntBASIC17.26■□□□□ 0.35
CDH13P55290 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC17.26■□□□□ 0.35
CDH13P55290 ZNF444P1-201ENST00000559497 298 ntBASIC17.26■□□□□ 0.35
CDH13P55290 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC17.26■□□□□ 0.35
CDH13P55290 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CDH13P55290 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH13P55290 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH13P55290 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH13P55290 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH13P55290 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
CDH13P55290 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH13P55290 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH13P55290 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH13P55290 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC17.26■□□□□ 0.35
CDH13P55290 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH13P55290 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH13P55290 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH13P55290 AL353692.3-201ENST00000407031 1396 ntBASIC17.26■□□□□ 0.35
CDH13P55290 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
CDH13P55290 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
CDH13P55290 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CDH13P55290 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.25■□□□□ 0.35
CDH13P55290 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH13P55290 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH13P55290 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH13P55290 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH13P55290 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CDH13P55290 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.25■□□□□ 0.35
CDH13P55290 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.25■□□□□ 0.35
CDH13P55290 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
CDH13P55290 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH13P55290 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH13P55290 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
CDH13P55290 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH13P55290 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC17.25■□□□□ 0.35
CDH13P55290 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CDH13P55290 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
CDH13P55290 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC17.25■□□□□ 0.35
CDH13P55290 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CDH13P55290 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms