Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SLC28A1O00337 PCDHA12-202ENST00000613593 2588 ntBASIC17.01■□□□□ 0.31
SLC28A1O00337 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SLC28A1O00337 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
SLC28A1O00337 AC106820.2-201ENST00000563775 3264 ntBASIC17.01■□□□□ 0.31
SLC28A1O00337 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
SLC28A1O00337 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
SLC28A1O00337 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
SLC28A1O00337 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
SLC28A1O00337 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC17■□□□□ 0.31
SLC28A1O00337 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17■□□□□ 0.31
SLC28A1O00337 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17■□□□□ 0.31
SLC28A1O00337 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC17■□□□□ 0.31
SLC28A1O00337 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17■□□□□ 0.31
SLC28A1O00337 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC17■□□□□ 0.31
SLC28A1O00337 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SLC28A1O00337 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC17■□□□□ 0.31
SLC28A1O00337 AC117947.1-201ENST00000427448 529 ntBASIC17■□□□□ 0.31
SLC28A1O00337 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC17■□□□□ 0.31
SLC28A1O00337 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17■□□□□ 0.31
SLC28A1O00337 AL359075.1-203ENST00000462729 1002 ntBASIC17■□□□□ 0.31
SLC28A1O00337 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
SLC28A1O00337 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC17■□□□□ 0.31
SLC28A1O00337 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17■□□□□ 0.31
SLC28A1O00337 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
SLC28A1O00337 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC17■□□□□ 0.31
SLC28A1O00337 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC17■□□□□ 0.31
SLC28A1O00337 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC17■□□□□ 0.31
SLC28A1O00337 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SLC28A1O00337 AC012306.2-201ENST00000609350 630 ntBASIC17■□□□□ 0.31
SLC28A1O00337 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17■□□□□ 0.31
SLC28A1O00337 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SLC28A1O00337 LYSMD4-203ENST00000378904 2122 ntBASIC17■□□□□ 0.31
SLC28A1O00337 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
SLC28A1O00337 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SLC28A1O00337 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17■□□□□ 0.31
SLC28A1O00337 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SLC28A1O00337 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17■□□□□ 0.31
SLC28A1O00337 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
SLC28A1O00337 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
SLC28A1O00337 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
SLC28A1O00337 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
SLC28A1O00337 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SLC28A1O00337 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
SLC28A1O00337 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC16.99■□□□□ 0.31
SLC28A1O00337 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
SLC28A1O00337 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SLC28A1O00337 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
SLC28A1O00337 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC16.99■□□□□ 0.31
SLC28A1O00337 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SLC28A1O00337 HBZP1-201ENST00000354915 429 ntBASIC16.99■□□□□ 0.31
SLC28A1O00337 RNF152P1-201ENST00000397754 604 ntBASIC16.99■□□□□ 0.31
SLC28A1O00337 AC096633.1-201ENST00000422446 749 ntBASIC16.99■□□□□ 0.31
SLC28A1O00337 TSPY5P-201ENST00000426936 936 ntBASIC16.99■□□□□ 0.31
SLC28A1O00337 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC16.99■□□□□ 0.31
SLC28A1O00337 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SLC28A1O00337 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC16.99■□□□□ 0.31
SLC28A1O00337 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SLC28A1O00337 FGF14-AS2-201ENST00000606448 1074 ntBASIC16.99■□□□□ 0.31
SLC28A1O00337 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
SLC28A1O00337 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
SLC28A1O00337 AC073912.3-201ENST00000624414 853 ntBASIC16.99■□□□□ 0.31
SLC28A1O00337 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SLC28A1O00337 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.99■□□□□ 0.31
SLC28A1O00337 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
SLC28A1O00337 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SLC28A1O00337 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SLC28A1O00337 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SLC28A1O00337 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SLC28A1O00337 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
SLC28A1O00337 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SLC28A1O00337 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SLC28A1O00337 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SLC28A1O00337 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
SLC28A1O00337 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC16.99■□□□□ 0.31
SLC28A1O00337 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SLC28A1O00337 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SLC28A1O00337 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SLC28A1O00337 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SLC28A1O00337 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC16.98■□□□□ 0.31
SLC28A1O00337 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
SLC28A1O00337 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.98■□□□□ 0.31
SLC28A1O00337 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
SLC28A1O00337 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
SLC28A1O00337 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SLC28A1O00337 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC16.98■□□□□ 0.31
SLC28A1O00337 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SLC28A1O00337 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SLC28A1O00337 LINC01311-201ENST00000565162 1445 ntBASIC16.98■□□□□ 0.31
SLC28A1O00337 AC073508.3-201ENST00000619697 1419 ntBASIC16.98■□□□□ 0.31
SLC28A1O00337 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SLC28A1O00337 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SLC28A1O00337 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SLC28A1O00337 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC16.98■□□□□ 0.31
SLC28A1O00337 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC16.98■□□□□ 0.31
SLC28A1O00337 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SLC28A1O00337 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC16.98■□□□□ 0.31
SLC28A1O00337 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC16.98■□□□□ 0.31
SLC28A1O00337 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC16.98■□□□□ 0.31
SLC28A1O00337 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms