Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TREX1Q9NSU2 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC17.6■□□□□ 0.41
TREX1Q9NSU2 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TREX1Q9NSU2 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TREX1Q9NSU2 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC17.6■□□□□ 0.41
TREX1Q9NSU2 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC17.6■□□□□ 0.41
TREX1Q9NSU2 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC17.6■□□□□ 0.41
TREX1Q9NSU2 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC17.6■□□□□ 0.41
TREX1Q9NSU2 AC087388.1-201ENST00000571370 1112 ntBASIC17.6■□□□□ 0.41
TREX1Q9NSU2 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC17.6■□□□□ 0.41
TREX1Q9NSU2 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.6■□□□□ 0.41
TREX1Q9NSU2 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
TREX1Q9NSU2 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC17.6■□□□□ 0.41
TREX1Q9NSU2 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC17.6■□□□□ 0.41
TREX1Q9NSU2 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.6■□□□□ 0.41
TREX1Q9NSU2 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC17.6■□□□□ 0.41
TREX1Q9NSU2 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC17.6■□□□□ 0.41
TREX1Q9NSU2 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TREX1Q9NSU2 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.6■□□□□ 0.41
TREX1Q9NSU2 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TREX1Q9NSU2 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC17.6■□□□□ 0.41
TREX1Q9NSU2 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC17.6■□□□□ 0.41
TREX1Q9NSU2 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
TREX1Q9NSU2 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TREX1Q9NSU2 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TREX1Q9NSU2 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TREX1Q9NSU2 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TREX1Q9NSU2 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TREX1Q9NSU2 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.6■□□□□ 0.41
TREX1Q9NSU2 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.6■□□□□ 0.41
TREX1Q9NSU2 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
TREX1Q9NSU2 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC17.6■□□□□ 0.41
TREX1Q9NSU2 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
TREX1Q9NSU2 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.59■□□□□ 0.41
TREX1Q9NSU2 AL049757.1-201ENST00000616842 1596 ntBASIC17.59■□□□□ 0.41
TREX1Q9NSU2 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TREX1Q9NSU2 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC17.59■□□□□ 0.41
TREX1Q9NSU2 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.59■□□□□ 0.41
TREX1Q9NSU2 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TREX1Q9NSU2 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TREX1Q9NSU2 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
TREX1Q9NSU2 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TREX1Q9NSU2 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
TREX1Q9NSU2 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TREX1Q9NSU2 AP002383.4-201ENST00000442518 975 ntBASIC17.59■□□□□ 0.41
TREX1Q9NSU2 TSSC2-201ENST00000450217 709 ntBASIC17.59■□□□□ 0.41
TREX1Q9NSU2 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC17.59■□□□□ 0.41
TREX1Q9NSU2 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC17.59■□□□□ 0.41
TREX1Q9NSU2 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC17.59■□□□□ 0.41
TREX1Q9NSU2 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC17.59■□□□□ 0.41
TREX1Q9NSU2 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
TREX1Q9NSU2 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TREX1Q9NSU2 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
TREX1Q9NSU2 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TREX1Q9NSU2 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TREX1Q9NSU2 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC17.59■□□□□ 0.41
TREX1Q9NSU2 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TREX1Q9NSU2 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC17.58■□□□□ 0.41
TREX1Q9NSU2 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
TREX1Q9NSU2 AC116353.5-201ENST00000638148 1699 ntBASIC17.58■□□□□ 0.41
TREX1Q9NSU2 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TREX1Q9NSU2 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TREX1Q9NSU2 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
TREX1Q9NSU2 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
TREX1Q9NSU2 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.41
TREX1Q9NSU2 IER3-202ENST00000376377 1350 ntBASIC17.58■□□□□ 0.4
TREX1Q9NSU2 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC17.58■□□□□ 0.4
TREX1Q9NSU2 AC012313.1-201ENST00000593393 3059 ntBASIC17.58■□□□□ 0.4
TREX1Q9NSU2 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TREX1Q9NSU2 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
TREX1Q9NSU2 CCS-201ENST00000310190 942 ntTSL 5 BASIC17.58■□□□□ 0.4
TREX1Q9NSU2 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC17.58■□□□□ 0.4
TREX1Q9NSU2 PPIH-202ENST00000372549 327 ntTSL 3 BASIC17.58■□□□□ 0.4
TREX1Q9NSU2 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.58■□□□□ 0.4
TREX1Q9NSU2 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
TREX1Q9NSU2 FAM220CP-201ENST00000395253 831 ntBASIC17.58■□□□□ 0.4
TREX1Q9NSU2 DRAXINP1-201ENST00000437611 948 ntBASIC17.58■□□□□ 0.4
TREX1Q9NSU2 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TREX1Q9NSU2 AC109462.3-201ENST00000573934 613 ntBASIC17.58■□□□□ 0.4
TREX1Q9NSU2 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TREX1Q9NSU2 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TREX1Q9NSU2 DBP-204ENST00000599385 709 ntTSL 3 BASIC17.58■□□□□ 0.4
TREX1Q9NSU2 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.4
TREX1Q9NSU2 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TREX1Q9NSU2 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TREX1Q9NSU2 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.4
TREX1Q9NSU2 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
TREX1Q9NSU2 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TREX1Q9NSU2 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TREX1Q9NSU2 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TREX1Q9NSU2 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
TREX1Q9NSU2 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TREX1Q9NSU2 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
TREX1Q9NSU2 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TREX1Q9NSU2 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC17.57■□□□□ 0.4
TREX1Q9NSU2 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TREX1Q9NSU2 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TREX1Q9NSU2 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TREX1Q9NSU2 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TREX1Q9NSU2 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms