Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP48Q86UV5 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP48Q86UV5 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
USP48Q86UV5 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC21.65■■□□□ 1.06
USP48Q86UV5 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
USP48Q86UV5 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC21.64■■□□□ 1.06
USP48Q86UV5 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
USP48Q86UV5 GATB-213ENST00000515812 1893 ntTSL 5 BASIC21.64■■□□□ 1.06
USP48Q86UV5 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC21.64■■□□□ 1.06
USP48Q86UV5 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
USP48Q86UV5 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
USP48Q86UV5 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
USP48Q86UV5 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
USP48Q86UV5 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC21.64■■□□□ 1.05
USP48Q86UV5 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC21.64■■□□□ 1.05
USP48Q86UV5 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
USP48Q86UV5 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.05
USP48Q86UV5 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
USP48Q86UV5 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
USP48Q86UV5 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC21.64■■□□□ 1.05
USP48Q86UV5 AC113404.2-201ENST00000507884 177 ntBASIC21.64■■□□□ 1.05
USP48Q86UV5 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC21.64■■□□□ 1.05
USP48Q86UV5 AC011467.2-201ENST00000598425 242 ntBASIC21.64■■□□□ 1.05
USP48Q86UV5 AL138831.2-201ENST00000606564 490 ntBASIC21.64■■□□□ 1.05
USP48Q86UV5 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
USP48Q86UV5 AC008735.5-201ENST00000623544 497 ntBASIC21.64■■□□□ 1.05
USP48Q86UV5 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC21.64■■□□□ 1.05
USP48Q86UV5 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
USP48Q86UV5 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
USP48Q86UV5 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
USP48Q86UV5 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC21.64■■□□□ 1.05
USP48Q86UV5 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
USP48Q86UV5 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
USP48Q86UV5 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
USP48Q86UV5 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
USP48Q86UV5 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
USP48Q86UV5 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
USP48Q86UV5 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC21.63■■□□□ 1.05
USP48Q86UV5 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
USP48Q86UV5 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
USP48Q86UV5 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC21.63■■□□□ 1.05
USP48Q86UV5 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC21.63■■□□□ 1.05
USP48Q86UV5 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
USP48Q86UV5 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC21.63■■□□□ 1.05
USP48Q86UV5 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
USP48Q86UV5 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
USP48Q86UV5 AC004832.2-201ENST00000426397 482 ntBASIC21.63■■□□□ 1.05
USP48Q86UV5 DANCR-204ENST00000444958 709 ntTSL 3 BASIC21.63■■□□□ 1.05
USP48Q86UV5 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
USP48Q86UV5 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC21.63■■□□□ 1.05
USP48Q86UV5 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
USP48Q86UV5 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
USP48Q86UV5 ESPNP-201ENST00000270691 2015 ntBASIC21.63■■□□□ 1.05
USP48Q86UV5 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
USP48Q86UV5 AP002414.3-201ENST00000589352 1468 ntBASIC21.63■■□□□ 1.05
USP48Q86UV5 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
USP48Q86UV5 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC21.63■■□□□ 1.05
USP48Q86UV5 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
USP48Q86UV5 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
USP48Q86UV5 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
USP48Q86UV5 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
USP48Q86UV5 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC21.63■■□□□ 1.05
USP48Q86UV5 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
USP48Q86UV5 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC21.62■■□□□ 1.05
USP48Q86UV5 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC21.62■■□□□ 1.05
USP48Q86UV5 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
USP48Q86UV5 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
USP48Q86UV5 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
USP48Q86UV5 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
USP48Q86UV5 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
USP48Q86UV5 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC21.62■■□□□ 1.05
USP48Q86UV5 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC21.62■■□□□ 1.05
USP48Q86UV5 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
USP48Q86UV5 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
USP48Q86UV5 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
USP48Q86UV5 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC21.62■■□□□ 1.05
USP48Q86UV5 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
USP48Q86UV5 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC21.62■■□□□ 1.05
USP48Q86UV5 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC21.62■■□□□ 1.05
USP48Q86UV5 AC105339.3-201ENST00000560043 636 ntBASIC21.62■■□□□ 1.05
USP48Q86UV5 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC21.62■■□□□ 1.05
USP48Q86UV5 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC21.62■■□□□ 1.05
USP48Q86UV5 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC21.62■■□□□ 1.05
USP48Q86UV5 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
USP48Q86UV5 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
USP48Q86UV5 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
USP48Q86UV5 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
USP48Q86UV5 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
USP48Q86UV5 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
USP48Q86UV5 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC21.62■■□□□ 1.05
USP48Q86UV5 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
USP48Q86UV5 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC21.61■■□□□ 1.05
USP48Q86UV5 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
USP48Q86UV5 KRT18P28-201ENST00000453838 1332 ntBASIC21.61■■□□□ 1.05
USP48Q86UV5 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC21.61■■□□□ 1.05
USP48Q86UV5 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC21.61■■□□□ 1.05
USP48Q86UV5 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC21.61■■□□□ 1.05
USP48Q86UV5 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
USP48Q86UV5 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
USP48Q86UV5 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms