Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC15.8■□□□□ 0.12
H3F3AP84243 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC15.8■□□□□ 0.12
H3F3AP84243 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
H3F3AP84243 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
H3F3AP84243 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
H3F3AP84243 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
H3F3AP84243 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
H3F3AP84243 HARS-201ENST00000307633 1780 ntTSL 2 BASIC15.8■□□□□ 0.12
H3F3AP84243 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC15.8■□□□□ 0.12
H3F3AP84243 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
H3F3AP84243 AC133963.1-201ENST00000504166 1679 ntBASIC15.8■□□□□ 0.12
H3F3AP84243 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
H3F3AP84243 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
H3F3AP84243 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
H3F3AP84243 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
H3F3AP84243 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
H3F3AP84243 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC15.8■□□□□ 0.12
H3F3AP84243 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC15.8■□□□□ 0.12
H3F3AP84243 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
H3F3AP84243 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
H3F3AP84243 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC15.8■□□□□ 0.12
H3F3AP84243 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC15.8■□□□□ 0.12
H3F3AP84243 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
H3F3AP84243 RCN1P2-201ENST00000398357 915 ntBASIC15.8■□□□□ 0.12
H3F3AP84243 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
H3F3AP84243 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC15.8■□□□□ 0.12
H3F3AP84243 AC103564.2-201ENST00000432853 1299 ntBASIC15.8■□□□□ 0.12
H3F3AP84243 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
H3F3AP84243 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC15.8■□□□□ 0.12
H3F3AP84243 FICD-205ENST00000552758 603 ntTSL 2 BASIC15.8■□□□□ 0.12
H3F3AP84243 PNN-202ENST00000553331 656 ntTSL 3 BASIC15.8■□□□□ 0.12
H3F3AP84243 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC15.8■□□□□ 0.12
H3F3AP84243 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC15.8■□□□□ 0.12
H3F3AP84243 AC099336.1-202ENST00000602961 463 ntBASIC15.8■□□□□ 0.12
H3F3AP84243 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC15.8■□□□□ 0.12
H3F3AP84243 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC15.8■□□□□ 0.12
H3F3AP84243 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
H3F3AP84243 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
H3F3AP84243 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
H3F3AP84243 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
H3F3AP84243 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
H3F3AP84243 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
H3F3AP84243 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
H3F3AP84243 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
H3F3AP84243 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
H3F3AP84243 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
H3F3AP84243 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC15.79■□□□□ 0.12
H3F3AP84243 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
H3F3AP84243 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
H3F3AP84243 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC15.79■□□□□ 0.12
H3F3AP84243 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
H3F3AP84243 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC15.79■□□□□ 0.12
H3F3AP84243 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC15.79■□□□□ 0.12
H3F3AP84243 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
H3F3AP84243 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
H3F3AP84243 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
H3F3AP84243 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC15.79■□□□□ 0.12
H3F3AP84243 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC15.79■□□□□ 0.12
H3F3AP84243 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
H3F3AP84243 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
H3F3AP84243 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC15.79■□□□□ 0.12
H3F3AP84243 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC15.79■□□□□ 0.12
H3F3AP84243 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
H3F3AP84243 AC096582.2-201ENST00000510860 516 ntBASIC15.79■□□□□ 0.12
H3F3AP84243 TMED1-207ENST00000591695 809 ntTSL 5 BASIC15.79■□□□□ 0.12
H3F3AP84243 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC15.79■□□□□ 0.12
H3F3AP84243 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
H3F3AP84243 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC15.79■□□□□ 0.12
H3F3AP84243 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
H3F3AP84243 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
H3F3AP84243 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC15.79■□□□□ 0.12
H3F3AP84243 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC15.79■□□□□ 0.12
H3F3AP84243 HLA-J-201ENST00000462773 1622 ntBASIC15.79■□□□□ 0.12
H3F3AP84243 PC-208ENST00000529047 1607 ntTSL 3 BASIC15.79■□□□□ 0.12
H3F3AP84243 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
H3F3AP84243 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC15.79■□□□□ 0.12
H3F3AP84243 AL049757.1-201ENST00000616842 1596 ntBASIC15.79■□□□□ 0.12
H3F3AP84243 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
H3F3AP84243 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC15.79■□□□□ 0.12
H3F3AP84243 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC15.78■□□□□ 0.12
H3F3AP84243 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
H3F3AP84243 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
H3F3AP84243 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
H3F3AP84243 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
H3F3AP84243 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC15.78■□□□□ 0.12
H3F3AP84243 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
H3F3AP84243 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC15.78■□□□□ 0.12
H3F3AP84243 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
H3F3AP84243 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
H3F3AP84243 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
H3F3AP84243 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
H3F3AP84243 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
H3F3AP84243 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
H3F3AP84243 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
H3F3AP84243 KRT16P4-201ENST00000453883 522 ntBASIC15.78■□□□□ 0.12
H3F3AP84243 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC15.78■□□□□ 0.12
H3F3AP84243 AC002558.1-201ENST00000488906 803 ntBASIC15.78■□□□□ 0.12
H3F3AP84243 SKP2-204ENST00000508514 821 ntTSL 3 BASIC15.78■□□□□ 0.12
H3F3AP84243 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC15.78■□□□□ 0.12
H3F3AP84243 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms