Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ABCA4P78363 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC15.16■□□□□ 0.02
ABCA4P78363 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
ABCA4P78363 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC15.16■□□□□ 0.02
ABCA4P78363 MIR770-201ENST00000390219 98 ntBASIC15.16■□□□□ 0.02
ABCA4P78363 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
ABCA4P78363 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
ABCA4P78363 SRP19-202ENST00000445150 833 ntTSL 2 BASIC15.16■□□□□ 0.02
ABCA4P78363 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ABCA4P78363 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC15.16■□□□□ 0.02
ABCA4P78363 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
ABCA4P78363 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
ABCA4P78363 AL049757.1-201ENST00000616842 1596 ntBASIC15.16■□□□□ 0.02
ABCA4P78363 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC15.16■□□□□ 0.02
ABCA4P78363 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC15.16■□□□□ 0.02
ABCA4P78363 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ABCA4P78363 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ABCA4P78363 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ABCA4P78363 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA4P78363 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA4P78363 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC15.15■□□□□ 0.02
ABCA4P78363 CRYGEP-201ENST00000412192 528 ntBASIC15.15■□□□□ 0.02
ABCA4P78363 ELK2BP-201ENST00000415014 1224 ntBASIC15.15■□□□□ 0.02
ABCA4P78363 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA4P78363 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA4P78363 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
ABCA4P78363 CYB561-217ENST00000582997 877 ntTSL 5 BASIC15.15■□□□□ 0.02
ABCA4P78363 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC15.15■□□□□ 0.02
ABCA4P78363 AL096865.1-201ENST00000606796 927 ntBASIC15.15■□□□□ 0.02
ABCA4P78363 PGM5P2-202ENST00000637225 1043 ntBASIC15.15■□□□□ 0.02
ABCA4P78363 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA4P78363 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC15.15■□□□□ 0.02
ABCA4P78363 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA4P78363 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC15.15■□□□□ 0.02
ABCA4P78363 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA4P78363 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA4P78363 AC100803.2-201ENST00000562459 1963 ntBASIC15.15■□□□□ 0.02
ABCA4P78363 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC15.15■□□□□ 0.02
ABCA4P78363 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC15.15■□□□□ 0.02
ABCA4P78363 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
ABCA4P78363 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA4P78363 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA4P78363 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC15.15■□□□□ 0.02
ABCA4P78363 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA4P78363 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA4P78363 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA4P78363 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA4P78363 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA4P78363 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA4P78363 SLC4A1APP2-201ENST00000424054 1259 ntBASIC15.15■□□□□ 0.02
ABCA4P78363 WDR53-203ENST00000429115 683 ntTSL 2 BASIC15.15■□□□□ 0.02
ABCA4P78363 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA4P78363 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC15.15■□□□□ 0.02
ABCA4P78363 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC15.15■□□□□ 0.02
ABCA4P78363 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA4P78363 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC15.15■□□□□ 0.02
ABCA4P78363 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA4P78363 AC005829.1-201ENST00000570002 483 ntBASIC15.15■□□□□ 0.02
ABCA4P78363 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC15.15■□□□□ 0.02
ABCA4P78363 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA4P78363 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC15.15■□□□□ 0.02
ABCA4P78363 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA4P78363 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA4P78363 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC15.15■□□□□ 0.02
ABCA4P78363 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA4P78363 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
ABCA4P78363 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC15.14■□□□□ 0.01
ABCA4P78363 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
ABCA4P78363 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ABCA4P78363 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ABCA4P78363 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
ABCA4P78363 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC15.14■□□□□ 0.01
ABCA4P78363 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
ABCA4P78363 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
ABCA4P78363 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC15.14■□□□□ 0.01
ABCA4P78363 C20orf181-201ENST00000623918 480 ntBASIC15.14■□□□□ 0.01
ABCA4P78363 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC15.14■□□□□ 0.01
ABCA4P78363 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC15.14■□□□□ 0.01
ABCA4P78363 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
ABCA4P78363 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC15.14■□□□□ 0.01
ABCA4P78363 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ABCA4P78363 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC15.14■□□□□ 0.01
ABCA4P78363 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ABCA4P78363 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
ABCA4P78363 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
ABCA4P78363 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC15.14■□□□□ 0.01
ABCA4P78363 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC15.14■□□□□ 0.01
ABCA4P78363 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ABCA4P78363 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ABCA4P78363 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC15.14■□□□□ 0.01
ABCA4P78363 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC15.14■□□□□ 0.01
ABCA4P78363 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC15.14■□□□□ 0.01
ABCA4P78363 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC15.14■□□□□ 0.01
ABCA4P78363 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC15.14■□□□□ 0.01
ABCA4P78363 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC15.14■□□□□ 0.01
ABCA4P78363 AC073592.5-201ENST00000624854 528 ntBASIC15.14■□□□□ 0.01
ABCA4P78363 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
ABCA4P78363 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
ABCA4P78363 AC132938.5-201ENST00000624980 1813 ntBASIC15.14■□□□□ 0.01
ABCA4P78363 AC073592.3-201ENST00000625118 1834 ntBASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms