Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC005336.2-201ENST00000593183 939 ntBASIC17.62■□□□□ 0.41
MSH3P20585 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
MSH3P20585 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC17.62■□□□□ 0.41
MSH3P20585 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSH3P20585 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSH3P20585 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSH3P20585 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSH3P20585 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSH3P20585 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
MSH3P20585 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC17.62■□□□□ 0.41
MSH3P20585 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
MSH3P20585 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
MSH3P20585 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.62■□□□□ 0.41
MSH3P20585 LINC00896-202ENST00000609602 2128 ntBASIC17.62■□□□□ 0.41
MSH3P20585 NSUN5P1-202ENST00000421140 1535 ntBASIC17.62■□□□□ 0.41
MSH3P20585 NSUN5P2-203ENST00000457352 1529 ntBASIC17.62■□□□□ 0.41
MSH3P20585 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSH3P20585 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.62■□□□□ 0.41
MSH3P20585 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.62■□□□□ 0.41
MSH3P20585 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.61■□□□□ 0.41
MSH3P20585 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSH3P20585 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
MSH3P20585 AC009949.1-201ENST00000623048 1830 ntBASIC17.61■□□□□ 0.41
MSH3P20585 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.61■□□□□ 0.41
MSH3P20585 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSH3P20585 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSH3P20585 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC17.61■□□□□ 0.41
MSH3P20585 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSH3P20585 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSH3P20585 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC17.61■□□□□ 0.41
MSH3P20585 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC17.61■□□□□ 0.41
MSH3P20585 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSH3P20585 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC17.61■□□□□ 0.41
MSH3P20585 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC17.61■□□□□ 0.41
MSH3P20585 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC17.61■□□□□ 0.41
MSH3P20585 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSH3P20585 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
MSH3P20585 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSH3P20585 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
MSH3P20585 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSH3P20585 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
MSH3P20585 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSH3P20585 AC125634.1-201ENST00000438758 1403 ntBASIC17.61■□□□□ 0.41
MSH3P20585 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.61■□□□□ 0.41
MSH3P20585 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSH3P20585 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSH3P20585 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
MSH3P20585 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MSH3P20585 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MSH3P20585 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.6■□□□□ 0.41
MSH3P20585 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
MSH3P20585 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MSH3P20585 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.6■□□□□ 0.41
MSH3P20585 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
MSH3P20585 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
MSH3P20585 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC17.6■□□□□ 0.41
MSH3P20585 AC096633.1-201ENST00000422446 749 ntBASIC17.6■□□□□ 0.41
MSH3P20585 IGHV3-47-201ENST00000425060 335 ntBASIC17.6■□□□□ 0.41
MSH3P20585 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MSH3P20585 DDX43P3-201ENST00000441064 443 ntBASIC17.6■□□□□ 0.41
MSH3P20585 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
MSH3P20585 AC009533.2-201ENST00000543664 586 ntBASIC17.6■□□□□ 0.41
MSH3P20585 AL138831.2-201ENST00000606564 490 ntBASIC17.6■□□□□ 0.41
MSH3P20585 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC17.6■□□□□ 0.41
MSH3P20585 AC097374.2-201ENST00000618617 1306 ntBASIC17.6■□□□□ 0.41
MSH3P20585 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
MSH3P20585 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC17.6■□□□□ 0.41
MSH3P20585 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC17.6■□□□□ 0.41
MSH3P20585 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.6■□□□□ 0.41
MSH3P20585 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.6■□□□□ 0.41
MSH3P20585 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC17.6■□□□□ 0.41
MSH3P20585 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
MSH3P20585 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MSH3P20585 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.6■□□□□ 0.41
MSH3P20585 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MSH3P20585 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
MSH3P20585 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MSH3P20585 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
MSH3P20585 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
MSH3P20585 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.59■□□□□ 0.41
MSH3P20585 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
MSH3P20585 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC17.59■□□□□ 0.41
MSH3P20585 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSH3P20585 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
MSH3P20585 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSH3P20585 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSH3P20585 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.59■□□□□ 0.41
MSH3P20585 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSH3P20585 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
MSH3P20585 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
MSH3P20585 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC17.59■□□□□ 0.41
MSH3P20585 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSH3P20585 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
MSH3P20585 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC17.59■□□□□ 0.41
MSH3P20585 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC17.59■□□□□ 0.41
MSH3P20585 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
MSH3P20585 KRT18P56-201ENST00000507275 550 ntBASIC17.59■□□□□ 0.41
MSH3P20585 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
MSH3P20585 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC17.59■□□□□ 0.41
MSH3P20585 AC099336.1-202ENST00000602961 463 ntBASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms