Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VIMP08670 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
VIMP08670 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
VIMP08670 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VIMP08670 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VIMP08670 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC17.79■□□□□ 0.44
VIMP08670 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VIMP08670 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VIMP08670 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VIMP08670 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VIMP08670 CROCCP5-201ENST00000436658 830 ntBASIC17.79■□□□□ 0.44
VIMP08670 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC17.79■□□□□ 0.44
VIMP08670 AL138781.1-201ENST00000566567 1274 ntBASIC17.79■□□□□ 0.44
VIMP08670 IKBKGP1-201ENST00000612193 1073 ntBASIC17.79■□□□□ 0.44
VIMP08670 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
VIMP08670 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.79■□□□□ 0.44
VIMP08670 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VIMP08670 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VIMP08670 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VIMP08670 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
VIMP08670 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
VIMP08670 GPAT2P1-201ENST00000444924 1672 ntBASIC17.79■□□□□ 0.44
VIMP08670 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17.79■□□□□ 0.44
VIMP08670 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC17.79■□□□□ 0.44
VIMP08670 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
VIMP08670 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
VIMP08670 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC17.79■□□□□ 0.44
VIMP08670 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
VIMP08670 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
VIMP08670 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
VIMP08670 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
VIMP08670 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
VIMP08670 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VIMP08670 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.78■□□□□ 0.44
VIMP08670 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.78■□□□□ 0.44
VIMP08670 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.78■□□□□ 0.44
VIMP08670 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
VIMP08670 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC17.78■□□□□ 0.44
VIMP08670 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
VIMP08670 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VIMP08670 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
VIMP08670 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC17.78■□□□□ 0.44
VIMP08670 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
VIMP08670 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VIMP08670 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VIMP08670 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC17.78■□□□□ 0.44
VIMP08670 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
VIMP08670 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC17.78■□□□□ 0.44
VIMP08670 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC17.78■□□□□ 0.44
VIMP08670 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC17.78■□□□□ 0.44
VIMP08670 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC17.78■□□□□ 0.44
VIMP08670 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
VIMP08670 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VIMP08670 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC17.78■□□□□ 0.44
VIMP08670 ANKRD26P3-201ENST00000454044 2748 ntBASIC17.78■□□□□ 0.44
VIMP08670 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VIMP08670 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
VIMP08670 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VIMP08670 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VIMP08670 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VIMP08670 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VIMP08670 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
VIMP08670 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
VIMP08670 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
VIMP08670 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
VIMP08670 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VIMP08670 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
VIMP08670 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
VIMP08670 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
VIMP08670 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.78■□□□□ 0.44
VIMP08670 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
VIMP08670 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC17.77■□□□□ 0.44
VIMP08670 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VIMP08670 AC005915.1-201ENST00000624912 2018 ntBASIC17.77■□□□□ 0.44
VIMP08670 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC17.77■□□□□ 0.44
VIMP08670 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
VIMP08670 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VIMP08670 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VIMP08670 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
VIMP08670 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VIMP08670 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
VIMP08670 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
VIMP08670 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC17.77■□□□□ 0.44
VIMP08670 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VIMP08670 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
VIMP08670 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
VIMP08670 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC17.77■□□□□ 0.44
VIMP08670 TK2-208ENST00000545043 1120 ntTSL 2 BASIC17.77■□□□□ 0.44
VIMP08670 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC17.77■□□□□ 0.44
VIMP08670 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC17.77■□□□□ 0.44
VIMP08670 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC17.77■□□□□ 0.44
VIMP08670 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
VIMP08670 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
VIMP08670 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
VIMP08670 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.77■□□□□ 0.43
VIMP08670 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
VIMP08670 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
VIMP08670 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
VIMP08670 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
VIMP08670 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms