Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRAIPQ9BWF2 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
TRAIPQ9BWF2 MIR574-201ENST00000385209 96 ntBASIC19.38■□□□□ 0.69
TRAIPQ9BWF2 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TRAIPQ9BWF2 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC19.38■□□□□ 0.69
TRAIPQ9BWF2 LITAF-211ENST00000572255 516 ntTSL 4 BASIC19.38■□□□□ 0.69
TRAIPQ9BWF2 PAM16-208ENST00000573553 722 ntTSL 2 BASIC19.38■□□□□ 0.69
TRAIPQ9BWF2 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
TRAIPQ9BWF2 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC19.38■□□□□ 0.69
TRAIPQ9BWF2 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
TRAIPQ9BWF2 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
TRAIPQ9BWF2 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC19.38■□□□□ 0.69
TRAIPQ9BWF2 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC19.38■□□□□ 0.69
TRAIPQ9BWF2 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRAIPQ9BWF2 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRAIPQ9BWF2 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TRAIPQ9BWF2 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAIPQ9BWF2 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC19.37■□□□□ 0.69
TRAIPQ9BWF2 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC19.37■□□□□ 0.69
TRAIPQ9BWF2 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAIPQ9BWF2 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAIPQ9BWF2 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAIPQ9BWF2 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC19.37■□□□□ 0.69
TRAIPQ9BWF2 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAIPQ9BWF2 KRT8P47-201ENST00000604727 1398 ntBASIC19.37■□□□□ 0.69
TRAIPQ9BWF2 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TRAIPQ9BWF2 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TRAIPQ9BWF2 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC19.37■□□□□ 0.69
TRAIPQ9BWF2 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC19.37■□□□□ 0.69
TRAIPQ9BWF2 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC19.37■□□□□ 0.69
TRAIPQ9BWF2 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC19.37■□□□□ 0.69
TRAIPQ9BWF2 COX5A-202ENST00000562233 441 ntTSL 3 BASIC19.37■□□□□ 0.69
TRAIPQ9BWF2 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC19.37■□□□□ 0.69
TRAIPQ9BWF2 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC19.37■□□□□ 0.69
TRAIPQ9BWF2 AL049840.3-201ENST00000602669 611 ntBASIC19.37■□□□□ 0.69
TRAIPQ9BWF2 AC023511.2-201ENST00000618803 211 ntBASIC19.37■□□□□ 0.69
TRAIPQ9BWF2 AD001527.2-201ENST00000622994 785 ntBASIC19.37■□□□□ 0.69
TRAIPQ9BWF2 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAIPQ9BWF2 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TRAIPQ9BWF2 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC19.37■□□□□ 0.69
TRAIPQ9BWF2 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC19.37■□□□□ 0.69
TRAIPQ9BWF2 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAIPQ9BWF2 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAIPQ9BWF2 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAIPQ9BWF2 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAIPQ9BWF2 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC19.37■□□□□ 0.69
TRAIPQ9BWF2 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAIPQ9BWF2 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC19.37■□□□□ 0.69
TRAIPQ9BWF2 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC19.37■□□□□ 0.69
TRAIPQ9BWF2 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRAIPQ9BWF2 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TRAIPQ9BWF2 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
TRAIPQ9BWF2 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRAIPQ9BWF2 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC19.36■□□□□ 0.69
TRAIPQ9BWF2 PMPCAP1-201ENST00000508114 1576 ntBASIC19.36■□□□□ 0.69
TRAIPQ9BWF2 AC010460.3-201ENST00000511359 1579 ntBASIC19.36■□□□□ 0.69
TRAIPQ9BWF2 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC19.36■□□□□ 0.69
TRAIPQ9BWF2 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC19.36■□□□□ 0.69
TRAIPQ9BWF2 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC19.36■□□□□ 0.69
TRAIPQ9BWF2 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC19.36■□□□□ 0.69
TRAIPQ9BWF2 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
TRAIPQ9BWF2 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC19.36■□□□□ 0.69
TRAIPQ9BWF2 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
TRAIPQ9BWF2 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRAIPQ9BWF2 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
TRAIPQ9BWF2 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
TRAIPQ9BWF2 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRAIPQ9BWF2 SLC25A1P1-201ENST00000528351 927 ntBASIC19.36■□□□□ 0.69
TRAIPQ9BWF2 AC106730.1-201ENST00000566722 1090 ntBASIC19.36■□□□□ 0.69
TRAIPQ9BWF2 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC19.36■□□□□ 0.69
TRAIPQ9BWF2 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC19.36■□□□□ 0.69
TRAIPQ9BWF2 AC073592.4-201ENST00000623827 446 ntBASIC19.36■□□□□ 0.69
TRAIPQ9BWF2 AC117500.6-201ENST00000624871 588 ntBASIC19.36■□□□□ 0.69
TRAIPQ9BWF2 ABBA01031661.1-201ENST00000634362 1253 ntBASIC19.36■□□□□ 0.69
TRAIPQ9BWF2 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
TRAIPQ9BWF2 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
TRAIPQ9BWF2 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRAIPQ9BWF2 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRAIPQ9BWF2 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
TRAIPQ9BWF2 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
TRAIPQ9BWF2 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRAIPQ9BWF2 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRAIPQ9BWF2 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC19.35■□□□□ 0.69
TRAIPQ9BWF2 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRAIPQ9BWF2 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRAIPQ9BWF2 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC19.35■□□□□ 0.69
TRAIPQ9BWF2 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
TRAIPQ9BWF2 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC19.35■□□□□ 0.69
TRAIPQ9BWF2 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TRAIPQ9BWF2 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRAIPQ9BWF2 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC19.35■□□□□ 0.69
TRAIPQ9BWF2 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRAIPQ9BWF2 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC19.35■□□□□ 0.69
TRAIPQ9BWF2 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
TRAIPQ9BWF2 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC19.35■□□□□ 0.69
TRAIPQ9BWF2 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.69
TRAIPQ9BWF2 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC19.35■□□□□ 0.69
TRAIPQ9BWF2 AC025062.2-201ENST00000605477 670 ntBASIC19.35■□□□□ 0.69
TRAIPQ9BWF2 AC116407.3-201ENST00000623905 1129 ntBASIC19.35■□□□□ 0.69
TRAIPQ9BWF2 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms