Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
ERCC3P19447 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ERCC3P19447 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ERCC3P19447 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC20.46■□□□□ 0.87
ERCC3P19447 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
ERCC3P19447 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC20.46■□□□□ 0.87
ERCC3P19447 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
ERCC3P19447 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC20.46■□□□□ 0.87
ERCC3P19447 AP002414.3-201ENST00000589352 1468 ntBASIC20.46■□□□□ 0.87
ERCC3P19447 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ERCC3P19447 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ERCC3P19447 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ERCC3P19447 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
ERCC3P19447 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ERCC3P19447 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC20.46■□□□□ 0.87
ERCC3P19447 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC20.46■□□□□ 0.87
ERCC3P19447 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ERCC3P19447 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC20.46■□□□□ 0.87
ERCC3P19447 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC20.46■□□□□ 0.87
ERCC3P19447 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC20.46■□□□□ 0.87
ERCC3P19447 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC20.46■□□□□ 0.87
ERCC3P19447 AC092183.1-201ENST00000469884 875 ntBASIC20.46■□□□□ 0.87
ERCC3P19447 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC20.46■□□□□ 0.87
ERCC3P19447 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
ERCC3P19447 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
ERCC3P19447 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ERCC3P19447 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ERCC3P19447 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
ERCC3P19447 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
ERCC3P19447 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
ERCC3P19447 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC20.46■□□□□ 0.87
ERCC3P19447 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ERCC3P19447 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
ERCC3P19447 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
ERCC3P19447 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
ERCC3P19447 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC20.45■□□□□ 0.87
ERCC3P19447 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC20.45■□□□□ 0.87
ERCC3P19447 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
ERCC3P19447 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC20.45■□□□□ 0.86
ERCC3P19447 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ERCC3P19447 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ERCC3P19447 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ERCC3P19447 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ERCC3P19447 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC20.45■□□□□ 0.86
ERCC3P19447 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC20.45■□□□□ 0.86
ERCC3P19447 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC20.45■□□□□ 0.86
ERCC3P19447 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC20.45■□□□□ 0.86
ERCC3P19447 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
ERCC3P19447 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
ERCC3P19447 AC005104.2-201ENST00000427818 678 ntBASIC20.45■□□□□ 0.86
ERCC3P19447 AL591424.1-201ENST00000442569 1213 ntBASIC20.45■□□□□ 0.86
ERCC3P19447 BX005266.1-201ENST00000473402 457 ntBASIC20.45■□□□□ 0.86
ERCC3P19447 MSRA-206ENST00000521209 814 ntTSL 3 BASIC20.45■□□□□ 0.86
ERCC3P19447 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC20.45■□□□□ 0.86
ERCC3P19447 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC20.45■□□□□ 0.86
ERCC3P19447 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC20.45■□□□□ 0.86
ERCC3P19447 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC20.45■□□□□ 0.86
ERCC3P19447 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ERCC3P19447 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC20.45■□□□□ 0.86
ERCC3P19447 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
ERCC3P19447 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ERCC3P19447 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
ERCC3P19447 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ERCC3P19447 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ERCC3P19447 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC20.45■□□□□ 0.86
ERCC3P19447 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
ERCC3P19447 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC20.45■□□□□ 0.86
ERCC3P19447 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
ERCC3P19447 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
ERCC3P19447 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
ERCC3P19447 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
ERCC3P19447 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
ERCC3P19447 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
ERCC3P19447 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC20.44■□□□□ 0.86
ERCC3P19447 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
ERCC3P19447 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
ERCC3P19447 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
ERCC3P19447 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC20.44■□□□□ 0.86
ERCC3P19447 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
ERCC3P19447 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
ERCC3P19447 KRT18P3-201ENST00000451602 1288 ntBASIC20.44■□□□□ 0.86
ERCC3P19447 NMU-202ENST00000505262 693 ntTSL 3 BASIC20.44■□□□□ 0.86
ERCC3P19447 UNC93B6-202ENST00000528242 690 ntBASIC20.44■□□□□ 0.86
ERCC3P19447 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
ERCC3P19447 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC20.44■□□□□ 0.86
ERCC3P19447 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
ERCC3P19447 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
ERCC3P19447 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
ERCC3P19447 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
ERCC3P19447 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC20.44■□□□□ 0.86
ERCC3P19447 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC20.44■□□□□ 0.86
ERCC3P19447 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
ERCC3P19447 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
ERCC3P19447 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC20.44■□□□□ 0.86
ERCC3P19447 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
ERCC3P19447 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
ERCC3P19447 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC20.44■□□□□ 0.86
ERCC3P19447 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
ERCC3P19447 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC20.43■□□□□ 0.86
ERCC3P19447 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms