Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC13.35□□□□□ -0.27
HLA-DQA1P01909 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HLA-DQA1P01909 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
HLA-DQA1P01909 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HLA-DQA1P01909 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC13.35□□□□□ -0.27
HLA-DQA1P01909 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HLA-DQA1P01909 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC13.35□□□□□ -0.27
HLA-DQA1P01909 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HLA-DQA1P01909 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HLA-DQA1P01909 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC13.35□□□□□ -0.27
HLA-DQA1P01909 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
HLA-DQA1P01909 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC13.35□□□□□ -0.27
HLA-DQA1P01909 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HLA-DQA1P01909 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
HLA-DQA1P01909 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 RCC2P3-201ENST00000418112 1537 ntBASIC13.34□□□□□ -0.27
HLA-DQA1P01909 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 AC005052.1-201ENST00000625181 2492 ntBASIC13.34□□□□□ -0.27
HLA-DQA1P01909 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 AC060834.1-201ENST00000443027 2032 ntBASIC13.34□□□□□ -0.27
HLA-DQA1P01909 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 GGT1-206ENST00000404223 952 ntTSL 2 BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 NME6-213ENST00000451657 871 ntTSL 2 BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 AC097658.1-201ENST00000475555 843 ntBASIC13.34□□□□□ -0.27
HLA-DQA1P01909 AC091874.3-201ENST00000512672 1195 ntBASIC13.34□□□□□ -0.27
HLA-DQA1P01909 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 NORAD-201ENST00000565493 5339 ntBASIC13.34□□□□□ -0.27
HLA-DQA1P01909 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC13.34□□□□□ -0.27
HLA-DQA1P01909 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
HLA-DQA1P01909 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.27
HLA-DQA1P01909 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
HLA-DQA1P01909 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
HLA-DQA1P01909 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
HLA-DQA1P01909 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
HLA-DQA1P01909 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.27
HLA-DQA1P01909 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC13.33□□□□□ -0.27
HLA-DQA1P01909 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
HLA-DQA1P01909 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
HLA-DQA1P01909 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
HLA-DQA1P01909 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC13.33□□□□□ -0.28
HLA-DQA1P01909 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
HLA-DQA1P01909 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC13.33□□□□□ -0.28
HLA-DQA1P01909 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC13.33□□□□□ -0.28
HLA-DQA1P01909 RHEB-204ENST00000472642 900 ntTSL 3 BASIC13.33□□□□□ -0.28
HLA-DQA1P01909 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC13.33□□□□□ -0.28
HLA-DQA1P01909 AC098934.4-201ENST00000564127 592 ntBASIC13.33□□□□□ -0.28
HLA-DQA1P01909 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC13.33□□□□□ -0.28
HLA-DQA1P01909 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC13.33□□□□□ -0.28
HLA-DQA1P01909 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC13.33□□□□□ -0.28
HLA-DQA1P01909 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC13.33□□□□□ -0.28
HLA-DQA1P01909 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HLA-DQA1P01909 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HLA-DQA1P01909 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC13.33□□□□□ -0.28
HLA-DQA1P01909 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HLA-DQA1P01909 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC13.33□□□□□ -0.28
HLA-DQA1P01909 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
HLA-DQA1P01909 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
HLA-DQA1P01909 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC13.33□□□□□ -0.28
HLA-DQA1P01909 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC13.33□□□□□ -0.28
HLA-DQA1P01909 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
HLA-DQA1P01909 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
HLA-DQA1P01909 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC13.33□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms