Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
MMP28Q9H239 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
MMP28Q9H239 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MMP28Q9H239 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
MMP28Q9H239 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MMP28Q9H239 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MMP28Q9H239 LINC01126-201ENST00000623515 1646 ntBASIC15.7■□□□□ 0.1
MMP28Q9H239 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
MMP28Q9H239 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MMP28Q9H239 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
MMP28Q9H239 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
MMP28Q9H239 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
MMP28Q9H239 TSPY21P-201ENST00000433481 731 ntBASIC15.7■□□□□ 0.1
MMP28Q9H239 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MMP28Q9H239 KSR1P1-201ENST00000446298 240 ntBASIC15.7■□□□□ 0.1
MMP28Q9H239 GXYLT1P3-201ENST00000453058 1193 ntBASIC15.7■□□□□ 0.1
MMP28Q9H239 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
MMP28Q9H239 FDX2-207ENST00000494368 584 ntTSL 4 BASIC15.7■□□□□ 0.1
MMP28Q9H239 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
MMP28Q9H239 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC15.7■□□□□ 0.1
MMP28Q9H239 AF186192.3-201ENST00000583427 947 ntBASIC15.7■□□□□ 0.1
MMP28Q9H239 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC15.7■□□□□ 0.1
MMP28Q9H239 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
MMP28Q9H239 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC15.7■□□□□ 0.1
MMP28Q9H239 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC15.7■□□□□ 0.1
MMP28Q9H239 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC15.7■□□□□ 0.1
MMP28Q9H239 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MMP28Q9H239 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MMP28Q9H239 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
MMP28Q9H239 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC15.7■□□□□ 0.1
MMP28Q9H239 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
MMP28Q9H239 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
MMP28Q9H239 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
MMP28Q9H239 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
MMP28Q9H239 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
MMP28Q9H239 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
MMP28Q9H239 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
MMP28Q9H239 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
MMP28Q9H239 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
MMP28Q9H239 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MMP28Q9H239 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MMP28Q9H239 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MMP28Q9H239 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC15.69■□□□□ 0.1
MMP28Q9H239 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
MMP28Q9H239 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC15.69■□□□□ 0.1
MMP28Q9H239 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
MMP28Q9H239 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MMP28Q9H239 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MMP28Q9H239 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC15.69■□□□□ 0.1
MMP28Q9H239 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
MMP28Q9H239 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MMP28Q9H239 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC15.69■□□□□ 0.1
MMP28Q9H239 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
MMP28Q9H239 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MMP28Q9H239 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MMP28Q9H239 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
MMP28Q9H239 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
MMP28Q9H239 MDFI-202ENST00000373050 809 ntTSL 2 BASIC15.69■□□□□ 0.1
MMP28Q9H239 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MMP28Q9H239 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
MMP28Q9H239 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC15.69■□□□□ 0.1
MMP28Q9H239 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
MMP28Q9H239 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC15.69■□□□□ 0.1
MMP28Q9H239 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC15.69■□□□□ 0.1
MMP28Q9H239 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC15.69■□□□□ 0.1
MMP28Q9H239 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
MMP28Q9H239 RPS15-203ENST00000586096 570 ntTSL 2 BASIC15.69■□□□□ 0.1
MMP28Q9H239 AC073195.1-201ENST00000607241 877 ntBASIC15.69■□□□□ 0.1
MMP28Q9H239 AC131212.4-201ENST00000623606 975 ntBASIC15.69■□□□□ 0.1
MMP28Q9H239 AC073912.3-201ENST00000624414 853 ntBASIC15.69■□□□□ 0.1
MMP28Q9H239 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MMP28Q9H239 WT1-209ENST00000530998 2421 ntTSL 2 BASIC15.69■□□□□ 0.1
MMP28Q9H239 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MMP28Q9H239 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
MMP28Q9H239 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MMP28Q9H239 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
MMP28Q9H239 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
MMP28Q9H239 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC15.69■□□□□ 0.1
MMP28Q9H239 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MMP28Q9H239 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MMP28Q9H239 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC15.69■□□□□ 0.1
MMP28Q9H239 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC15.69■□□□□ 0.1
MMP28Q9H239 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MMP28Q9H239 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC15.69■□□□□ 0.1
MMP28Q9H239 KRT16P1-201ENST00000399124 1418 ntBASIC15.68■□□□□ 0.1
MMP28Q9H239 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
MMP28Q9H239 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
MMP28Q9H239 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC15.68■□□□□ 0.1
MMP28Q9H239 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
MMP28Q9H239 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
MMP28Q9H239 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
MMP28Q9H239 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
MMP28Q9H239 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MMP28Q9H239 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
MMP28Q9H239 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
MMP28Q9H239 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
MMP28Q9H239 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
MMP28Q9H239 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC15.68■□□□□ 0.1
MMP28Q9H239 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
MMP28Q9H239 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms