Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC27.62■■■□□ 2.01
VPS8Q8N3P4 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
VPS8Q8N3P4 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
VPS8Q8N3P4 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
VPS8Q8N3P4 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC27.61■■■□□ 2.01
VPS8Q8N3P4 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC27.61■■■□□ 2.01
VPS8Q8N3P4 AC073621.1-201ENST00000392730 636 ntBASIC27.61■■■□□ 2.01
VPS8Q8N3P4 CSF3-203ENST00000394148 622 ntTSL 3 BASIC27.61■■■□□ 2.01
VPS8Q8N3P4 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC27.61■■■□□ 2.01
VPS8Q8N3P4 S100A2-206ENST00000497140 697 ntTSL 2 BASIC27.61■■■□□ 2.01
VPS8Q8N3P4 PRKN-208ENST00000610470 531 ntTSL 2 BASIC27.61■■■□□ 2.01
VPS8Q8N3P4 AC120114.3-201ENST00000611923 658 ntBASIC27.61■■■□□ 2.01
VPS8Q8N3P4 PRKN-209ENST00000612485 225 ntTSL 5 BASIC27.61■■■□□ 2.01
VPS8Q8N3P4 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC27.61■■■□□ 2.01
VPS8Q8N3P4 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC27.61■■■□□ 2.01
VPS8Q8N3P4 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC27.61■■■□□ 2.01
VPS8Q8N3P4 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
VPS8Q8N3P4 AC133963.1-201ENST00000504166 1679 ntBASIC27.61■■■□□ 2.01
VPS8Q8N3P4 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC27.61■■■□□ 2.01
VPS8Q8N3P4 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
VPS8Q8N3P4 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC27.61■■■□□ 2.01
VPS8Q8N3P4 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
VPS8Q8N3P4 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC27.61■■■□□ 2.01
VPS8Q8N3P4 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC27.61■■■□□ 2.01
VPS8Q8N3P4 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC27.61■■■□□ 2.01
VPS8Q8N3P4 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
VPS8Q8N3P4 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
VPS8Q8N3P4 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
VPS8Q8N3P4 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC27.6■■■□□ 2.01
VPS8Q8N3P4 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC27.6■■■□□ 2.01
VPS8Q8N3P4 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC27.6■■■□□ 2.01
VPS8Q8N3P4 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC27.6■■■□□ 2.01
VPS8Q8N3P4 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
VPS8Q8N3P4 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC27.6■■■□□ 2.01
VPS8Q8N3P4 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC27.6■■■□□ 2.01
VPS8Q8N3P4 IL9RP2-201ENST00000423948 1312 ntBASIC27.6■■■□□ 2.01
VPS8Q8N3P4 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC27.6■■■□□ 2.01
VPS8Q8N3P4 ENSA-206ENST00000361631 725 ntTSL 2 BASIC27.6■■■□□ 2.01
VPS8Q8N3P4 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC27.6■■■□□ 2.01
VPS8Q8N3P4 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC27.6■■■□□ 2.01
VPS8Q8N3P4 IGHV3-22-201ENST00000520721 359 ntBASIC27.6■■■□□ 2.01
VPS8Q8N3P4 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC27.6■■■□□ 2.01
VPS8Q8N3P4 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC27.6■■■□□ 2.01
VPS8Q8N3P4 ETFA-208ENST00000559602 792 ntTSL 3 BASIC27.6■■■□□ 2.01
VPS8Q8N3P4 AC139887.3-201ENST00000568585 713 ntBASIC27.6■■■□□ 2.01
VPS8Q8N3P4 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC27.6■■■□□ 2.01
VPS8Q8N3P4 AL671883.3-201ENST00000603274 991 ntBASIC27.6■■■□□ 2.01
VPS8Q8N3P4 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC27.6■■■□□ 2.01
VPS8Q8N3P4 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
VPS8Q8N3P4 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
VPS8Q8N3P4 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
VPS8Q8N3P4 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
VPS8Q8N3P4 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
VPS8Q8N3P4 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC27.59■■■□□ 2.01
VPS8Q8N3P4 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
VPS8Q8N3P4 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC27.59■■■□□ 2.01
VPS8Q8N3P4 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC27.59■■■□□ 2.01
VPS8Q8N3P4 COX5A-202ENST00000562233 441 ntTSL 3 BASIC27.59■■■□□ 2.01
VPS8Q8N3P4 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC27.59■■■□□ 2.01
VPS8Q8N3P4 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC27.59■■■□□ 2.01
VPS8Q8N3P4 AL139327.4-201ENST00000612362 153 ntBASIC27.59■■■□□ 2.01
VPS8Q8N3P4 BX640515.1-201ENST00000617215 977 ntBASIC27.59■■■□□ 2.01
VPS8Q8N3P4 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC27.59■■■□□ 2.01
VPS8Q8N3P4 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC27.59■■■□□ 2.01
VPS8Q8N3P4 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC27.59■■■□□ 2.01
VPS8Q8N3P4 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC27.59■■■□□ 2.01
VPS8Q8N3P4 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC27.59■■■□□ 2.01
VPS8Q8N3P4 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC27.59■■■□□ 2.01
VPS8Q8N3P4 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
VPS8Q8N3P4 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC27.59■■■□□ 2.01
VPS8Q8N3P4 NCF1C-201ENST00000438382 1427 ntBASIC27.59■■■□□ 2.01
VPS8Q8N3P4 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
VPS8Q8N3P4 AL022342.1-201ENST00000400363 863 ntBASIC27.58■■■□□ 2.01
VPS8Q8N3P4 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC27.58■■■□□ 2.01
VPS8Q8N3P4 COPE-211ENST00000600932 1144 ntTSL 5 BASIC27.58■■■□□ 2.01
VPS8Q8N3P4 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC27.58■■■□□ 2.01
VPS8Q8N3P4 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC27.58■■■□□ 2.01
VPS8Q8N3P4 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
VPS8Q8N3P4 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC27.58■■■□□ 2.01
VPS8Q8N3P4 GNE-204ENST00000539208 2190 ntTSL 2 BASIC27.58■■■□□ 2.01
VPS8Q8N3P4 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
VPS8Q8N3P4 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC27.58■■■□□ 2.01
VPS8Q8N3P4 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC27.58■■■□□ 2.01
VPS8Q8N3P4 AP002414.3-201ENST00000589352 1468 ntBASIC27.58■■■□□ 2.01
VPS8Q8N3P4 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC27.58■■■□□ 2.01
VPS8Q8N3P4 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
VPS8Q8N3P4 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC27.58■■■□□ 2.01
VPS8Q8N3P4 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC27.58■■■□□ 2.01
VPS8Q8N3P4 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC27.58■■■□□ 2
VPS8Q8N3P4 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC27.58■■■□□ 2
VPS8Q8N3P4 MSRA-206ENST00000521209 814 ntTSL 3 BASIC27.58■■■□□ 2
VPS8Q8N3P4 RPS29-206ENST00000557111 488 ntTSL 2 BASIC27.58■■■□□ 2
VPS8Q8N3P4 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC27.58■■■□□ 2
VPS8Q8N3P4 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC27.58■■■□□ 2
VPS8Q8N3P4 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC27.58■■■□□ 2
VPS8Q8N3P4 AL589182.2-201ENST00000619332 1049 ntBASIC27.58■■■□□ 2
VPS8Q8N3P4 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC27.58■■■□□ 2
VPS8Q8N3P4 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC27.58■■■□□ 2
VPS8Q8N3P4 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC27.58■■■□□ 2
VPS8Q8N3P4 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC27.57■■■□□ 2
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms