Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VIMP08670 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC17.88■□□□□ 0.45
VIMP08670 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VIMP08670 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
VIMP08670 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
VIMP08670 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
VIMP08670 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VIMP08670 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VIMP08670 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.87■□□□□ 0.45
VIMP08670 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.87■□□□□ 0.45
VIMP08670 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VIMP08670 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
VIMP08670 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
VIMP08670 TSPY26P-202ENST00000565928 3884 ntBASIC17.87■□□□□ 0.45
VIMP08670 ABR-203ENST00000536794 2213 ntTSL 2 BASIC17.87■□□□□ 0.45
VIMP08670 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VIMP08670 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC17.87■□□□□ 0.45
VIMP08670 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VIMP08670 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VIMP08670 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VIMP08670 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
VIMP08670 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VIMP08670 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VIMP08670 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VIMP08670 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC17.87■□□□□ 0.45
VIMP08670 CDCA4P2-201ENST00000441182 718 ntBASIC17.87■□□□□ 0.45
VIMP08670 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VIMP08670 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
VIMP08670 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.87■□□□□ 0.45
VIMP08670 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
VIMP08670 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.87■□□□□ 0.45
VIMP08670 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC17.87■□□□□ 0.45
VIMP08670 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VIMP08670 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC17.87■□□□□ 0.45
VIMP08670 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
VIMP08670 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
VIMP08670 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
VIMP08670 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC17.87■□□□□ 0.45
VIMP08670 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.87■□□□□ 0.45
VIMP08670 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VIMP08670 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.86■□□□□ 0.45
VIMP08670 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VIMP08670 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VIMP08670 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VIMP08670 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VIMP08670 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC17.86■□□□□ 0.45
VIMP08670 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VIMP08670 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.86■□□□□ 0.45
VIMP08670 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VIMP08670 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VIMP08670 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC17.86■□□□□ 0.45
VIMP08670 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VIMP08670 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
VIMP08670 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC17.86■□□□□ 0.45
VIMP08670 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VIMP08670 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC17.86■□□□□ 0.45
VIMP08670 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VIMP08670 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
VIMP08670 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VIMP08670 PPP1R14BP2-201ENST00000426284 444 ntBASIC17.86■□□□□ 0.45
VIMP08670 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VIMP08670 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC17.86■□□□□ 0.45
VIMP08670 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
VIMP08670 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC17.86■□□□□ 0.45
VIMP08670 PFKL-212ENST00000628044 129 ntTSL 3 BASIC17.86■□□□□ 0.45
VIMP08670 MYC-209ENST00000641252 345 ntBASIC17.86■□□□□ 0.45
VIMP08670 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
VIMP08670 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VIMP08670 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VIMP08670 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
VIMP08670 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.86■□□□□ 0.45
VIMP08670 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
VIMP08670 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.86■□□□□ 0.45
VIMP08670 AC060834.1-201ENST00000443027 2032 ntBASIC17.86■□□□□ 0.45
VIMP08670 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
VIMP08670 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
VIMP08670 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VIMP08670 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC17.86■□□□□ 0.45
VIMP08670 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
VIMP08670 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
VIMP08670 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC17.86■□□□□ 0.45
VIMP08670 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
VIMP08670 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VIMP08670 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC17.85■□□□□ 0.45
VIMP08670 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VIMP08670 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VIMP08670 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
VIMP08670 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VIMP08670 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
VIMP08670 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VIMP08670 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
VIMP08670 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
VIMP08670 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
VIMP08670 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
VIMP08670 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
VIMP08670 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VIMP08670 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
VIMP08670 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.85■□□□□ 0.45
VIMP08670 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
VIMP08670 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC17.85■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms