Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 MEG3-211ENST00000452514 461 ntTSL 3 BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 KRT16P4-201ENST00000453883 522 ntBASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 KRT126P-201ENST00000549467 1181 ntBASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 FICD-205ENST00000552758 603 ntTSL 2 BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 BNIP3P18-201ENST00000593976 575 ntBASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
TRIM39Q9HCM9 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 AC096633.1-201ENST00000422446 749 ntBASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 TBCB-205ENST00000585746 875 ntTSL 3 BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 AC138894.3-201ENST00000603787 634 ntBASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 AC116407.2-201ENST00000613639 860 ntBASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 TP73-AS1-210ENST00000637775 1455 ntBASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
TRIM39Q9HCM9 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM39Q9HCM9 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM39Q9HCM9 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM39Q9HCM9 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM39Q9HCM9 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM39Q9HCM9 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM39Q9HCM9 KRT18P55-202ENST00000578578 1546 ntBASIC17.62■□□□□ 0.41
TRIM39Q9HCM9 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM39Q9HCM9 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM39Q9HCM9 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM39Q9HCM9 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC17.62■□□□□ 0.41
TRIM39Q9HCM9 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM39Q9HCM9 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM39Q9HCM9 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM39Q9HCM9 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC17.62■□□□□ 0.41
TRIM39Q9HCM9 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM39Q9HCM9 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC17.62■□□□□ 0.41
TRIM39Q9HCM9 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
TRIM39Q9HCM9 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms