Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC19.5■□□□□ 0.71
CLCN3P51790 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLCN3P51790 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLCN3P51790 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC19.49■□□□□ 0.71
CLCN3P51790 PXK-206ENST00000463280 2825 ntTSL 2 BASIC19.49■□□□□ 0.71
CLCN3P51790 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CLCN3P51790 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLCN3P51790 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CLCN3P51790 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLCN3P51790 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLCN3P51790 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLCN3P51790 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLCN3P51790 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLCN3P51790 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLCN3P51790 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
CLCN3P51790 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
CLCN3P51790 AC092910.1-201ENST00000482027 1129 ntBASIC19.49■□□□□ 0.71
CLCN3P51790 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC19.49■□□□□ 0.71
CLCN3P51790 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLCN3P51790 RPL18-209ENST00000550645 463 ntTSL 5 BASIC19.49■□□□□ 0.71
CLCN3P51790 RPL18-214ENST00000552588 559 ntTSL 3 BASIC19.49■□□□□ 0.71
CLCN3P51790 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC19.49■□□□□ 0.71
CLCN3P51790 AC019129.2-201ENST00000609837 1235 ntBASIC19.49■□□□□ 0.71
CLCN3P51790 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC19.49■□□□□ 0.71
CLCN3P51790 HLA-J-201ENST00000462773 1622 ntBASIC19.49■□□□□ 0.71
CLCN3P51790 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC19.49■□□□□ 0.71
CLCN3P51790 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLCN3P51790 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC19.49■□□□□ 0.71
CLCN3P51790 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
CLCN3P51790 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.49■□□□□ 0.71
CLCN3P51790 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC19.49■□□□□ 0.71
CLCN3P51790 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLCN3P51790 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CLCN3P51790 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CLCN3P51790 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CLCN3P51790 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CLCN3P51790 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC19.49■□□□□ 0.71
CLCN3P51790 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CLCN3P51790 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLCN3P51790 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC19.48■□□□□ 0.71
CLCN3P51790 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLCN3P51790 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC19.48■□□□□ 0.71
CLCN3P51790 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC19.48■□□□□ 0.71
CLCN3P51790 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLCN3P51790 AL353593.2-201ENST00000602529 1483 ntBASIC19.48■□□□□ 0.71
CLCN3P51790 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLCN3P51790 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC19.48■□□□□ 0.71
CLCN3P51790 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLCN3P51790 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLCN3P51790 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLCN3P51790 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLCN3P51790 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLCN3P51790 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC19.48■□□□□ 0.71
CLCN3P51790 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC19.48■□□□□ 0.71
CLCN3P51790 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC19.48■□□□□ 0.71
CLCN3P51790 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CLCN3P51790 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.48■□□□□ 0.71
CLCN3P51790 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CLCN3P51790 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CLCN3P51790 MIR574-201ENST00000385209 96 ntBASIC19.48■□□□□ 0.71
CLCN3P51790 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLCN3P51790 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC19.48■□□□□ 0.71
CLCN3P51790 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC19.48■□□□□ 0.71
CLCN3P51790 RPL13AP23-201ENST00000480739 586 ntBASIC19.48■□□□□ 0.71
CLCN3P51790 MSRA-206ENST00000521209 814 ntTSL 3 BASIC19.48■□□□□ 0.71
CLCN3P51790 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC19.48■□□□□ 0.71
CLCN3P51790 COX5A-202ENST00000562233 441 ntTSL 3 BASIC19.48■□□□□ 0.71
CLCN3P51790 CYGB-205ENST00000590175 830 ntTSL 3 BASIC19.48■□□□□ 0.71
CLCN3P51790 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CLCN3P51790 AC008735.5-201ENST00000623544 497 ntBASIC19.48■□□□□ 0.71
CLCN3P51790 AL022326.1-202ENST00000641533 845 ntBASIC19.48■□□□□ 0.71
CLCN3P51790 AC107918.4-202ENST00000641623 219 ntBASIC19.48■□□□□ 0.71
CLCN3P51790 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC19.48■□□□□ 0.71
CLCN3P51790 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLCN3P51790 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CLCN3P51790 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.48■□□□□ 0.71
CLCN3P51790 AC132938.5-201ENST00000624980 1813 ntBASIC19.48■□□□□ 0.71
CLCN3P51790 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLCN3P51790 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CLCN3P51790 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
CLCN3P51790 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
CLCN3P51790 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CLCN3P51790 PC-208ENST00000529047 1607 ntTSL 3 BASIC19.47■□□□□ 0.71
CLCN3P51790 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CLCN3P51790 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CLCN3P51790 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CLCN3P51790 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC19.47■□□□□ 0.71
CLCN3P51790 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CLCN3P51790 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CLCN3P51790 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CLCN3P51790 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
CLCN3P51790 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC19.47■□□□□ 0.71
CLCN3P51790 CENPM-204ENST00000402420 688 ntTSL 5 BASIC19.47■□□□□ 0.71
CLCN3P51790 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CLCN3P51790 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC19.47■□□□□ 0.71
CLCN3P51790 AC106730.1-201ENST00000566722 1090 ntBASIC19.47■□□□□ 0.71
CLCN3P51790 AC109462.3-201ENST00000573934 613 ntBASIC19.47■□□□□ 0.71
CLCN3P51790 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
CLCN3P51790 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CLCN3P51790 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms