Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
CACNA1AO00555 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CACNA1AO00555 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
CACNA1AO00555 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC16.56■□□□□ 0.24
CACNA1AO00555 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC16.56■□□□□ 0.24
CACNA1AO00555 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CACNA1AO00555 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC16.56■□□□□ 0.24
CACNA1AO00555 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CACNA1AO00555 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CACNA1AO00555 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CACNA1AO00555 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CACNA1AO00555 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
CACNA1AO00555 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CACNA1AO00555 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
CACNA1AO00555 MDH2-205ENST00000461263 648 ntTSL 2 BASIC16.56■□□□□ 0.24
CACNA1AO00555 AC099548.2-209ENST00000480264 625 ntBASIC16.56■□□□□ 0.24
CACNA1AO00555 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC16.56■□□□□ 0.24
CACNA1AO00555 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC16.56■□□□□ 0.24
CACNA1AO00555 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC16.56■□□□□ 0.24
CACNA1AO00555 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
CACNA1AO00555 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
CACNA1AO00555 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC16.55■□□□□ 0.24
CACNA1AO00555 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC16.55■□□□□ 0.24
CACNA1AO00555 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
CACNA1AO00555 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CACNA1AO00555 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
CACNA1AO00555 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CACNA1AO00555 CD81-202ENST00000381036 880 ntTSL 3 BASIC16.55■□□□□ 0.24
CACNA1AO00555 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CACNA1AO00555 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC16.55■□□□□ 0.24
CACNA1AO00555 SPCS2P4-201ENST00000436160 681 ntBASIC16.55■□□□□ 0.24
CACNA1AO00555 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC16.55■□□□□ 0.24
CACNA1AO00555 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC16.55■□□□□ 0.24
CACNA1AO00555 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
CACNA1AO00555 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC16.55■□□□□ 0.24
CACNA1AO00555 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
CACNA1AO00555 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CACNA1AO00555 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
CACNA1AO00555 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC16.55■□□□□ 0.24
CACNA1AO00555 UBQLN4P1-201ENST00000461599 1801 ntBASIC16.55■□□□□ 0.24
CACNA1AO00555 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CACNA1AO00555 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
CACNA1AO00555 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CACNA1AO00555 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
CACNA1AO00555 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC16.55■□□□□ 0.24
CACNA1AO00555 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC16.55■□□□□ 0.24
CACNA1AO00555 KRT223P-202ENST00000449164 1292 ntBASIC16.55■□□□□ 0.24
CACNA1AO00555 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC16.55■□□□□ 0.24
CACNA1AO00555 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC16.55■□□□□ 0.24
CACNA1AO00555 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC16.55■□□□□ 0.24
CACNA1AO00555 AC103810.3-201ENST00000583567 96 ntBASIC16.55■□□□□ 0.24
CACNA1AO00555 AC008735.3-201ENST00000596646 500 ntBASIC16.55■□□□□ 0.24
CACNA1AO00555 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
CACNA1AO00555 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CACNA1AO00555 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CACNA1AO00555 BID-212ENST00000614949 1988 ntTSL 5 BASIC16.55■□□□□ 0.24
CACNA1AO00555 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.55■□□□□ 0.24
CACNA1AO00555 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
CACNA1AO00555 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CACNA1AO00555 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC16.54■□□□□ 0.24
CACNA1AO00555 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC16.54■□□□□ 0.24
CACNA1AO00555 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CACNA1AO00555 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
CACNA1AO00555 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CACNA1AO00555 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CACNA1AO00555 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC16.54■□□□□ 0.24
CACNA1AO00555 ORC6-206ENST00000568364 888 ntTSL 5 BASIC16.54■□□□□ 0.24
CACNA1AO00555 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC16.54■□□□□ 0.24
CACNA1AO00555 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC16.54■□□□□ 0.24
CACNA1AO00555 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
CACNA1AO00555 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.54■□□□□ 0.24
CACNA1AO00555 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CACNA1AO00555 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CACNA1AO00555 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CACNA1AO00555 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CACNA1AO00555 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC16.54■□□□□ 0.24
CACNA1AO00555 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CACNA1AO00555 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CACNA1AO00555 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16.54■□□□□ 0.24
CACNA1AO00555 TMEM14DP-201ENST00000422205 345 ntBASIC16.54■□□□□ 0.24
CACNA1AO00555 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC16.54■□□□□ 0.24
CACNA1AO00555 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CACNA1AO00555 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC16.54■□□□□ 0.24
CACNA1AO00555 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
CACNA1AO00555 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC16.54■□□□□ 0.24
CACNA1AO00555 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC16.54■□□□□ 0.24
CACNA1AO00555 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CACNA1AO00555 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CACNA1AO00555 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CACNA1AO00555 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CACNA1AO00555 MED17-221ENST00000639724 2317 ntTSL 5 BASIC16.53■□□□□ 0.24
CACNA1AO00555 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC16.53■□□□□ 0.24
CACNA1AO00555 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CACNA1AO00555 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CACNA1AO00555 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CACNA1AO00555 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CACNA1AO00555 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CACNA1AO00555 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CACNA1AO00555 AC103564.2-201ENST00000432853 1299 ntBASIC16.53■□□□□ 0.24
CACNA1AO00555 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms