Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC24.84■■□□□ 1.57
VPS13AQ96RL7 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
VPS13AQ96RL7 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC24.84■■□□□ 1.57
VPS13AQ96RL7 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
VPS13AQ96RL7 AL139246.5-201ENST00000606645 996 ntBASIC24.84■■□□□ 1.57
VPS13AQ96RL7 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
VPS13AQ96RL7 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
VPS13AQ96RL7 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
VPS13AQ96RL7 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC24.83■■□□□ 1.56
VPS13AQ96RL7 RARRES2P6-201ENST00000567333 442 ntBASIC24.83■■□□□ 1.56
VPS13AQ96RL7 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
VPS13AQ96RL7 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC24.82■■□□□ 1.56
VPS13AQ96RL7 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
VPS13AQ96RL7 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC24.82■■□□□ 1.56
VPS13AQ96RL7 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
VPS13AQ96RL7 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
VPS13AQ96RL7 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC24.82■■□□□ 1.56
VPS13AQ96RL7 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC24.82■■□□□ 1.56
VPS13AQ96RL7 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC24.82■■□□□ 1.56
VPS13AQ96RL7 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC24.81■■□□□ 1.56
VPS13AQ96RL7 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
VPS13AQ96RL7 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
VPS13AQ96RL7 AL135925.1-201ENST00000605920 1701 ntBASIC24.81■■□□□ 1.56
VPS13AQ96RL7 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC24.81■■□□□ 1.56
VPS13AQ96RL7 AC018755.3-202ENST00000596210 929 ntBASIC24.81■■□□□ 1.56
VPS13AQ96RL7 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC24.8■■□□□ 1.56
VPS13AQ96RL7 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC24.8■■□□□ 1.56
VPS13AQ96RL7 MTX2-204ENST00000443241 799 ntTSL 3 BASIC24.8■■□□□ 1.56
VPS13AQ96RL7 MIR4787-201ENST00000607364 84 ntBASIC24.8■■□□□ 1.56
VPS13AQ96RL7 KRT125P-201ENST00000546827 989 ntBASIC24.79■■□□□ 1.56
VPS13AQ96RL7 AC110285.6-201ENST00000617652 491 ntBASIC24.79■■□□□ 1.56
VPS13AQ96RL7 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC24.79■■□□□ 1.56
VPS13AQ96RL7 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC24.79■■□□□ 1.56
VPS13AQ96RL7 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
VPS13AQ96RL7 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
VPS13AQ96RL7 AC019171.1-201ENST00000601251 1056 ntBASIC24.78■■□□□ 1.56
VPS13AQ96RL7 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC24.77■■□□□ 1.56
VPS13AQ96RL7 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
VPS13AQ96RL7 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
VPS13AQ96RL7 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC24.77■■□□□ 1.56
VPS13AQ96RL7 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
VPS13AQ96RL7 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
VPS13AQ96RL7 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC24.76■■□□□ 1.55
VPS13AQ96RL7 PFN2-211ENST00000489155 636 ntTSL 4 BASIC24.76■■□□□ 1.55
VPS13AQ96RL7 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
VPS13AQ96RL7 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC24.75■■□□□ 1.55
VPS13AQ96RL7 UNC93B8-201ENST00000511903 705 ntBASIC24.75■■□□□ 1.55
VPS13AQ96RL7 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC24.74■■□□□ 1.55
VPS13AQ96RL7 AC005837.3-201ENST00000612163 286 ntBASIC24.73■■□□□ 1.55
VPS13AQ96RL7 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC24.72■■□□□ 1.55
VPS13AQ96RL7 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC24.72■■□□□ 1.55
VPS13AQ96RL7 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
VPS13AQ96RL7 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC24.72■■□□□ 1.55
VPS13AQ96RL7 MIR3960-201ENST00000583311 91 ntBASIC24.72■■□□□ 1.55
VPS13AQ96RL7 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC24.71■■□□□ 1.55
VPS13AQ96RL7 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC24.71■■□□□ 1.55
VPS13AQ96RL7 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC24.71■■□□□ 1.55
VPS13AQ96RL7 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
VPS13AQ96RL7 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
VPS13AQ96RL7 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC24.7■■□□□ 1.54
VPS13AQ96RL7 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
VPS13AQ96RL7 AC026271.2-201ENST00000428091 497 ntBASIC24.69■■□□□ 1.54
VPS13AQ96RL7 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC24.69■■□□□ 1.54
VPS13AQ96RL7 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
VPS13AQ96RL7 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC24.68■■□□□ 1.54
VPS13AQ96RL7 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
VPS13AQ96RL7 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
VPS13AQ96RL7 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC24.68■■□□□ 1.54
VPS13AQ96RL7 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
VPS13AQ96RL7 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
VPS13AQ96RL7 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
VPS13AQ96RL7 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
VPS13AQ96RL7 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
VPS13AQ96RL7 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC24.67■■□□□ 1.54
VPS13AQ96RL7 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
VPS13AQ96RL7 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC24.67■■□□□ 1.54
VPS13AQ96RL7 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
VPS13AQ96RL7 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC24.66■■□□□ 1.54
VPS13AQ96RL7 NALT1-201ENST00000429224 738 ntTSL 5 BASIC24.66■■□□□ 1.54
VPS13AQ96RL7 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
VPS13AQ96RL7 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC24.66■■□□□ 1.54
VPS13AQ96RL7 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC24.66■■□□□ 1.54
VPS13AQ96RL7 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
VPS13AQ96RL7 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
VPS13AQ96RL7 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC24.65■■□□□ 1.54
VPS13AQ96RL7 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC24.65■■□□□ 1.54
VPS13AQ96RL7 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
VPS13AQ96RL7 LONRF2P2-201ENST00000439212 571 ntBASIC24.65■■□□□ 1.54
VPS13AQ96RL7 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC24.65■■□□□ 1.54
VPS13AQ96RL7 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
VPS13AQ96RL7 ZNRF2P3-201ENST00000424200 374 ntBASIC24.64■■□□□ 1.54
VPS13AQ96RL7 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC24.63■■□□□ 1.53
VPS13AQ96RL7 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
VPS13AQ96RL7 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
VPS13AQ96RL7 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
VPS13AQ96RL7 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
VPS13AQ96RL7 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC24.62■■□□□ 1.53
VPS13AQ96RL7 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
VPS13AQ96RL7 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC24.62■■□□□ 1.53
VPS13AQ96RL7 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC24.62■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 9.6 ms