Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
CPNE4Q96A23 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
CPNE4Q96A23 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CPNE4Q96A23 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
CPNE4Q96A23 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC22■■□□□ 1.11
CPNE4Q96A23 ABHD17AP5-201ENST00000580133 923 ntBASIC22■■□□□ 1.11
CPNE4Q96A23 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC22■■□□□ 1.11
CPNE4Q96A23 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
CPNE4Q96A23 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC22■■□□□ 1.11
CPNE4Q96A23 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CPNE4Q96A23 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC21.99■■□□□ 1.11
CPNE4Q96A23 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CPNE4Q96A23 PFN2-211ENST00000489155 636 ntTSL 4 BASIC21.99■■□□□ 1.11
CPNE4Q96A23 AC007029.1-201ENST00000604183 313 ntBASIC21.99■■□□□ 1.11
CPNE4Q96A23 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
CPNE4Q96A23 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CPNE4Q96A23 AC142472.1-201ENST00000612013 1741 ntBASIC21.98■■□□□ 1.11
CPNE4Q96A23 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC21.98■■□□□ 1.11
CPNE4Q96A23 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC21.98■■□□□ 1.11
CPNE4Q96A23 MIR3960-201ENST00000583311 91 ntBASIC21.98■■□□□ 1.11
CPNE4Q96A23 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
CPNE4Q96A23 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
CPNE4Q96A23 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
CPNE4Q96A23 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CPNE4Q96A23 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
CPNE4Q96A23 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
CPNE4Q96A23 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CPNE4Q96A23 AP004609.3-201ENST00000610705 1884 ntBASIC21.95■■□□□ 1.1
CPNE4Q96A23 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CPNE4Q96A23 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
CPNE4Q96A23 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
CPNE4Q96A23 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
CPNE4Q96A23 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
CPNE4Q96A23 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC21.94■■□□□ 1.1
CPNE4Q96A23 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
CPNE4Q96A23 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC21.94■■□□□ 1.1
CPNE4Q96A23 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC21.93■■□□□ 1.1
CPNE4Q96A23 RP9P-202ENST00000450133 1212 ntBASIC21.93■■□□□ 1.1
CPNE4Q96A23 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
CPNE4Q96A23 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CPNE4Q96A23 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
CPNE4Q96A23 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CPNE4Q96A23 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
CPNE4Q96A23 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CPNE4Q96A23 HYI-213ENST00000583037 1322 ntTSL 5 BASIC21.92■■□□□ 1.1
CPNE4Q96A23 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC21.92■■□□□ 1.1
CPNE4Q96A23 GFER-205ENST00000569451 517 ntTSL 5 BASIC21.92■■□□□ 1.1
CPNE4Q96A23 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC21.92■■□□□ 1.1
CPNE4Q96A23 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
CPNE4Q96A23 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CPNE4Q96A23 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC21.91■■□□□ 1.1
CPNE4Q96A23 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC21.91■■□□□ 1.1
CPNE4Q96A23 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CPNE4Q96A23 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC21.91■■□□□ 1.1
CPNE4Q96A23 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
CPNE4Q96A23 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CPNE4Q96A23 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CPNE4Q96A23 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
CPNE4Q96A23 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC21.9■■□□□ 1.1
CPNE4Q96A23 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC21.9■■□□□ 1.1
CPNE4Q96A23 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CPNE4Q96A23 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC21.89■■□□□ 1.1
CPNE4Q96A23 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
CPNE4Q96A23 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC21.89■■□□□ 1.1
CPNE4Q96A23 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC21.89■■□□□ 1.09
CPNE4Q96A23 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC21.89■■□□□ 1.09
CPNE4Q96A23 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
CPNE4Q96A23 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
CPNE4Q96A23 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CPNE4Q96A23 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
CPNE4Q96A23 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
CPNE4Q96A23 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CPNE4Q96A23 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CPNE4Q96A23 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC21.88■■□□□ 1.09
CPNE4Q96A23 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CPNE4Q96A23 AC093536.1-201ENST00000569153 554 ntBASIC21.88■■□□□ 1.09
CPNE4Q96A23 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC21.88■■□□□ 1.09
CPNE4Q96A23 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC21.88■■□□□ 1.09
CPNE4Q96A23 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CPNE4Q96A23 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
CPNE4Q96A23 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CPNE4Q96A23 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
CPNE4Q96A23 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
CPNE4Q96A23 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC21.87■■□□□ 1.09
CPNE4Q96A23 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC21.86■■□□□ 1.09
CPNE4Q96A23 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
CPNE4Q96A23 HES4-204ENST00000484667 667 ntTSL 3 BASIC21.86■■□□□ 1.09
CPNE4Q96A23 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
CPNE4Q96A23 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CPNE4Q96A23 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
CPNE4Q96A23 NTF6A-201ENST00000591175 560 ntBASIC21.85■■□□□ 1.09
CPNE4Q96A23 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC21.85■■□□□ 1.09
CPNE4Q96A23 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CPNE4Q96A23 AC026202.3-201ENST00000600805 1127 ntBASIC21.84■■□□□ 1.09
CPNE4Q96A23 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
CPNE4Q96A23 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
CPNE4Q96A23 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
CPNE4Q96A23 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC21.83■■□□□ 1.09
CPNE4Q96A23 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC21.83■■□□□ 1.09
CPNE4Q96A23 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC21.83■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms