Protein–RNA interactions for Protein: Q5W0Q7

USPL1, SUMO-specific isopeptidase USPL1, humanhuman

Predictions only

Length 1,092 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USPL1Q5W0Q7 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
USPL1Q5W0Q7 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
USPL1Q5W0Q7 AL139393.2-201ENST00000608721 2025 ntBASIC31.48■■■□□ 2.63
USPL1Q5W0Q7 HYI-210ENST00000486909 905 ntTSL 5 BASIC31.48■■■□□ 2.63
USPL1Q5W0Q7 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC31.48■■■□□ 2.63
USPL1Q5W0Q7 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
USPL1Q5W0Q7 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC31.48■■■□□ 2.63
USPL1Q5W0Q7 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
USPL1Q5W0Q7 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
USPL1Q5W0Q7 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC31.47■■■□□ 2.63
USPL1Q5W0Q7 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC31.47■■■□□ 2.63
USPL1Q5W0Q7 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
USPL1Q5W0Q7 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC31.47■■■□□ 2.63
USPL1Q5W0Q7 HES6-204ENST00000409182 863 ntTSL 2 BASIC31.46■■■□□ 2.63
USPL1Q5W0Q7 MTURN-203ENST00000409688 843 ntTSL 2 BASIC31.46■■■□□ 2.63
USPL1Q5W0Q7 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC31.46■■■□□ 2.63
USPL1Q5W0Q7 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC31.46■■■□□ 2.63
USPL1Q5W0Q7 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
USPL1Q5W0Q7 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
USPL1Q5W0Q7 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC31.45■■■□□ 2.63
USPL1Q5W0Q7 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC31.45■■■□□ 2.63
USPL1Q5W0Q7 AP002414.2-202ENST00000590929 1450 ntBASIC31.45■■■□□ 2.62
USPL1Q5W0Q7 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC31.45■■■□□ 2.62
USPL1Q5W0Q7 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.62
USPL1Q5W0Q7 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC31.44■■■□□ 2.62
USPL1Q5W0Q7 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
USPL1Q5W0Q7 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
USPL1Q5W0Q7 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC31.43■■■□□ 2.62
USPL1Q5W0Q7 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC31.43■■■□□ 2.62
USPL1Q5W0Q7 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC31.43■■■□□ 2.62
USPL1Q5W0Q7 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
USPL1Q5W0Q7 MIR4508-201ENST00000584178 70 ntBASIC31.42■■■□□ 2.62
USPL1Q5W0Q7 AC131212.1-201ENST00000613771 668 ntBASIC31.42■■■□□ 2.62
USPL1Q5W0Q7 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
USPL1Q5W0Q7 GUSBP5-201ENST00000418136 578 ntBASIC31.41■■■□□ 2.62
USPL1Q5W0Q7 OR2A1-AS1-204ENST00000470435 602 ntBASIC31.41■■■□□ 2.62
USPL1Q5W0Q7 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC31.41■■■□□ 2.62
USPL1Q5W0Q7 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC31.41■■■□□ 2.62
USPL1Q5W0Q7 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
USPL1Q5W0Q7 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC31.4■■■□□ 2.62
USPL1Q5W0Q7 AL359504.2-201ENST00000605506 1601 ntBASIC31.39■■■□□ 2.62
USPL1Q5W0Q7 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC31.39■■■□□ 2.62
USPL1Q5W0Q7 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC31.39■■■□□ 2.62
USPL1Q5W0Q7 IDNK-203ENST00000405990 629 ntTSL 2 BASIC31.39■■■□□ 2.62
USPL1Q5W0Q7 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC31.39■■■□□ 2.62
USPL1Q5W0Q7 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC31.39■■■□□ 2.62
USPL1Q5W0Q7 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC31.39■■■□□ 2.61
USPL1Q5W0Q7 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
USPL1Q5W0Q7 THA1P-201ENST00000590384 1145 ntBASIC31.38■■■□□ 2.61
USPL1Q5W0Q7 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC31.38■■■□□ 2.61
USPL1Q5W0Q7 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC31.38■■■□□ 2.61
USPL1Q5W0Q7 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC31.38■■■□□ 2.61
USPL1Q5W0Q7 IDNK-201ENST00000376417 511 ntTSL 5 BASIC31.37■■■□□ 2.61
USPL1Q5W0Q7 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
USPL1Q5W0Q7 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC31.37■■■□□ 2.61
USPL1Q5W0Q7 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC31.37■■■□□ 2.61
USPL1Q5W0Q7 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC31.36■■■□□ 2.61
USPL1Q5W0Q7 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
USPL1Q5W0Q7 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
USPL1Q5W0Q7 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC31.35■■■□□ 2.61
USPL1Q5W0Q7 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC31.35■■■□□ 2.61
USPL1Q5W0Q7 AC103724.3-201ENST00000564481 992 ntBASIC31.35■■■□□ 2.61
USPL1Q5W0Q7 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC31.35■■■□□ 2.61
USPL1Q5W0Q7 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC31.34■■■□□ 2.61
USPL1Q5W0Q7 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC31.34■■■□□ 2.61
USPL1Q5W0Q7 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
USPL1Q5W0Q7 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
USPL1Q5W0Q7 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC31.34■■■□□ 2.61
USPL1Q5W0Q7 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
USPL1Q5W0Q7 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
USPL1Q5W0Q7 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC31.33■■■□□ 2.61
USPL1Q5W0Q7 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC31.33■■■□□ 2.61
USPL1Q5W0Q7 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC31.32■■■□□ 2.6
USPL1Q5W0Q7 PRTG-204ENST00000561292 833 ntTSL 3 BASIC31.32■■■□□ 2.6
USPL1Q5W0Q7 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
USPL1Q5W0Q7 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC31.32■■■□□ 2.6
USPL1Q5W0Q7 AC019069.1-201ENST00000610008 1333 ntBASIC31.31■■■□□ 2.6
USPL1Q5W0Q7 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC31.3■■■□□ 2.6
USPL1Q5W0Q7 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
USPL1Q5W0Q7 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
USPL1Q5W0Q7 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC31.3■■■□□ 2.6
USPL1Q5W0Q7 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
USPL1Q5W0Q7 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC31.3■■■□□ 2.6
USPL1Q5W0Q7 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC31.3■■■□□ 2.6
USPL1Q5W0Q7 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC31.29■■■□□ 2.6
USPL1Q5W0Q7 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC31.29■■■□□ 2.6
USPL1Q5W0Q7 AL031848.2-201ENST00000607670 837 ntBASIC31.29■■■□□ 2.6
USPL1Q5W0Q7 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC31.28■■■□□ 2.6
USPL1Q5W0Q7 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
USPL1Q5W0Q7 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
USPL1Q5W0Q7 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC31.27■■■□□ 2.6
USPL1Q5W0Q7 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
USPL1Q5W0Q7 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC31.27■■■□□ 2.6
USPL1Q5W0Q7 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC31.27■■■□□ 2.6
USPL1Q5W0Q7 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC31.27■■■□□ 2.6
USPL1Q5W0Q7 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
USPL1Q5W0Q7 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC31.26■■■□□ 2.6
USPL1Q5W0Q7 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC31.26■■■□□ 2.59
USPL1Q5W0Q7 MTX2-204ENST00000443241 799 ntTSL 3 BASIC31.26■■■□□ 2.59
USPL1Q5W0Q7 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC31.26■■■□□ 2.59
Retrieved 100 of 98,524 protein–RNA pairs in 10.1 ms