Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC22.76■■□□□ 1.23
RNF4P78317 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC22.76■■□□□ 1.23
RNF4P78317 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC22.76■■□□□ 1.23
RNF4P78317 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC22.75■■□□□ 1.23
RNF4P78317 MIR3960-201ENST00000583311 91 ntBASIC22.75■■□□□ 1.23
RNF4P78317 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC22.75■■□□□ 1.23
RNF4P78317 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
RNF4P78317 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC22.74■■□□□ 1.23
RNF4P78317 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC22.74■■□□□ 1.23
RNF4P78317 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
RNF4P78317 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
RNF4P78317 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC22.74■■□□□ 1.23
RNF4P78317 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC22.74■■□□□ 1.23
RNF4P78317 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC22.74■■□□□ 1.23
RNF4P78317 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC22.73■■□□□ 1.23
RNF4P78317 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC22.73■■□□□ 1.23
RNF4P78317 RP9P-202ENST00000450133 1212 ntBASIC22.73■■□□□ 1.23
RNF4P78317 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC22.73■■□□□ 1.23
RNF4P78317 AC142472.1-201ENST00000612013 1741 ntBASIC22.73■■□□□ 1.23
RNF4P78317 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
RNF4P78317 AP004609.3-201ENST00000610705 1884 ntBASIC22.73■■□□□ 1.23
RNF4P78317 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
RNF4P78317 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC22.72■■□□□ 1.23
RNF4P78317 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
RNF4P78317 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
RNF4P78317 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC22.72■■□□□ 1.23
RNF4P78317 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC22.72■■□□□ 1.23
RNF4P78317 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC22.72■■□□□ 1.23
RNF4P78317 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
RNF4P78317 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
RNF4P78317 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
RNF4P78317 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
RNF4P78317 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
RNF4P78317 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.23
RNF4P78317 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC22.7■■□□□ 1.23
RNF4P78317 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
RNF4P78317 GFER-205ENST00000569451 517 ntTSL 5 BASIC22.7■■□□□ 1.22
RNF4P78317 NTF6A-201ENST00000591175 560 ntBASIC22.7■■□□□ 1.22
RNF4P78317 U85056.1-201ENST00000616429 682 ntBASIC22.7■■□□□ 1.22
RNF4P78317 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC22.7■■□□□ 1.22
RNF4P78317 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
RNF4P78317 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC22.7■■□□□ 1.22
RNF4P78317 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC22.7■■□□□ 1.22
RNF4P78317 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
RNF4P78317 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
RNF4P78317 AC093536.1-201ENST00000569153 554 ntBASIC22.69■■□□□ 1.22
RNF4P78317 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
RNF4P78317 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC22.69■■□□□ 1.22
RNF4P78317 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC22.69■■□□□ 1.22
RNF4P78317 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
RNF4P78317 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC22.68■■□□□ 1.22
RNF4P78317 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC22.68■■□□□ 1.22
RNF4P78317 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
RNF4P78317 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC22.67■■□□□ 1.22
RNF4P78317 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
RNF4P78317 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC22.67■■□□□ 1.22
RNF4P78317 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC22.67■■□□□ 1.22
RNF4P78317 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
RNF4P78317 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC22.67■■□□□ 1.22
RNF4P78317 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
RNF4P78317 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC22.67■■□□□ 1.22
RNF4P78317 AC026202.3-201ENST00000600805 1127 ntBASIC22.67■■□□□ 1.22
RNF4P78317 AC133552.2-201ENST00000619106 1032 ntBASIC22.67■■□□□ 1.22
RNF4P78317 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC22.67■■□□□ 1.22
RNF4P78317 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
RNF4P78317 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
RNF4P78317 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
RNF4P78317 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC22.66■■□□□ 1.22
RNF4P78317 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
RNF4P78317 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
RNF4P78317 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC22.66■■□□□ 1.22
RNF4P78317 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC22.66■■□□□ 1.22
RNF4P78317 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
RNF4P78317 AC009831.1-201ENST00000580420 1582 ntBASIC22.66■■□□□ 1.22
RNF4P78317 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC22.66■■□□□ 1.22
RNF4P78317 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC22.66■■□□□ 1.22
RNF4P78317 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
RNF4P78317 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
RNF4P78317 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
RNF4P78317 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
RNF4P78317 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC22.65■■□□□ 1.22
RNF4P78317 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
RNF4P78317 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
RNF4P78317 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
RNF4P78317 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
RNF4P78317 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
RNF4P78317 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
RNF4P78317 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
RNF4P78317 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
RNF4P78317 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
RNF4P78317 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
RNF4P78317 RAP2CP1-202ENST00000605179 643 ntBASIC22.63■■□□□ 1.21
RNF4P78317 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC22.63■■□□□ 1.21
RNF4P78317 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
RNF4P78317 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
RNF4P78317 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
RNF4P78317 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
RNF4P78317 HES4-204ENST00000484667 667 ntTSL 3 BASIC22.62■■□□□ 1.21
RNF4P78317 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC22.62■■□□□ 1.21
RNF4P78317 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 61.8 ms