Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC30.83■■■□□ 2.53
BRCA1P38398 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC30.82■■■□□ 2.53
BRCA1P38398 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC30.82■■■□□ 2.52
BRCA1P38398 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC30.81■■■□□ 2.52
BRCA1P38398 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
BRCA1P38398 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC30.8■■■□□ 2.52
BRCA1P38398 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC30.8■■■□□ 2.52
BRCA1P38398 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
BRCA1P38398 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
BRCA1P38398 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
BRCA1P38398 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC30.8■■■□□ 2.52
BRCA1P38398 AC019171.1-201ENST00000601251 1056 ntBASIC30.8■■■□□ 2.52
BRCA1P38398 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
BRCA1P38398 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC30.79■■■□□ 2.52
BRCA1P38398 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC30.78■■■□□ 2.52
BRCA1P38398 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC30.77■■■□□ 2.52
BRCA1P38398 AP004833.2-201ENST00000532228 1454 ntBASIC30.76■■■□□ 2.51
BRCA1P38398 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC30.75■■■□□ 2.51
BRCA1P38398 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
BRCA1P38398 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC30.74■■■□□ 2.51
BRCA1P38398 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC30.74■■■□□ 2.51
BRCA1P38398 UNC93B8-201ENST00000511903 705 ntBASIC30.74■■■□□ 2.51
BRCA1P38398 AC131281.2-201ENST00000520478 145 ntBASIC30.74■■■□□ 2.51
BRCA1P38398 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC30.74■■■□□ 2.51
BRCA1P38398 AC018755.3-202ENST00000596210 929 ntBASIC30.74■■■□□ 2.51
BRCA1P38398 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC30.74■■■□□ 2.51
BRCA1P38398 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC30.73■■■□□ 2.51
BRCA1P38398 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
BRCA1P38398 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
BRCA1P38398 KRT16P3-201ENST00000439127 1283 ntBASIC30.72■■■□□ 2.51
BRCA1P38398 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC30.72■■■□□ 2.51
BRCA1P38398 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
BRCA1P38398 PEMT-206ENST00000435340 960 ntTSL 5 BASIC30.71■■■□□ 2.51
BRCA1P38398 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC30.71■■■□□ 2.51
BRCA1P38398 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC30.71■■■□□ 2.51
BRCA1P38398 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
BRCA1P38398 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
BRCA1P38398 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
BRCA1P38398 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
BRCA1P38398 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC30.7■■■□□ 2.5
BRCA1P38398 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
BRCA1P38398 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC30.69■■■□□ 2.5
BRCA1P38398 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
BRCA1P38398 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
BRCA1P38398 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
BRCA1P38398 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC30.69■■■□□ 2.5
BRCA1P38398 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC30.69■■■□□ 2.5
BRCA1P38398 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
BRCA1P38398 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC30.68■■■□□ 2.5
BRCA1P38398 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
BRCA1P38398 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC30.68■■■□□ 2.5
BRCA1P38398 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
BRCA1P38398 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC30.67■■■□□ 2.5
BRCA1P38398 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC30.67■■■□□ 2.5
BRCA1P38398 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
BRCA1P38398 AC087393.1-201ENST00000582896 145 ntBASIC30.67■■■□□ 2.5
BRCA1P38398 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
BRCA1P38398 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
BRCA1P38398 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
BRCA1P38398 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
BRCA1P38398 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC30.65■■■□□ 2.5
BRCA1P38398 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
BRCA1P38398 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
BRCA1P38398 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
BRCA1P38398 MIR4787-201ENST00000607364 84 ntBASIC30.64■■■□□ 2.5
BRCA1P38398 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC30.63■■■□□ 2.49
BRCA1P38398 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC30.63■■■□□ 2.49
BRCA1P38398 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC30.63■■■□□ 2.49
BRCA1P38398 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC30.63■■■□□ 2.49
BRCA1P38398 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC30.62■■■□□ 2.49
BRCA1P38398 BX664725.1-201ENST00000438252 379 ntBASIC30.62■■■□□ 2.49
BRCA1P38398 LONRF2P2-201ENST00000439212 571 ntBASIC30.62■■■□□ 2.49
BRCA1P38398 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC30.62■■■□□ 2.49
BRCA1P38398 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC30.62■■■□□ 2.49
BRCA1P38398 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC30.62■■■□□ 2.49
BRCA1P38398 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
BRCA1P38398 AL359504.2-201ENST00000605506 1601 ntBASIC30.61■■■□□ 2.49
BRCA1P38398 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
BRCA1P38398 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC30.61■■■□□ 2.49
BRCA1P38398 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC30.6■■■□□ 2.49
BRCA1P38398 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC30.6■■■□□ 2.49
BRCA1P38398 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
BRCA1P38398 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC30.59■■■□□ 2.49
BRCA1P38398 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
BRCA1P38398 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC30.58■■■□□ 2.49
BRCA1P38398 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
BRCA1P38398 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC30.58■■■□□ 2.49
BRCA1P38398 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC30.58■■■□□ 2.49
BRCA1P38398 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC30.58■■■□□ 2.49
BRCA1P38398 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
BRCA1P38398 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC30.56■■■□□ 2.48
BRCA1P38398 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
BRCA1P38398 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC30.55■■■□□ 2.48
BRCA1P38398 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC30.55■■■□□ 2.48
BRCA1P38398 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
BRCA1P38398 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC30.55■■■□□ 2.48
BRCA1P38398 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
BRCA1P38398 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC30.55■■■□□ 2.48
BRCA1P38398 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
BRCA1P38398 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC30.54■■■□□ 2.48
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms