Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC30.83■■■□□ 2.53
BRCA1P38398 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC30.82■■■□□ 2.53
BRCA1P38398 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC30.82■■■□□ 2.52
BRCA1P38398 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC30.81■■■□□ 2.52
BRCA1P38398 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
BRCA1P38398 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC30.8■■■□□ 2.52
BRCA1P38398 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC30.8■■■□□ 2.52
BRCA1P38398 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
BRCA1P38398 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
BRCA1P38398 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
BRCA1P38398 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC30.8■■■□□ 2.52
BRCA1P38398 AC019171.1-201ENST00000601251 1056 ntBASIC30.8■■■□□ 2.52
BRCA1P38398 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
BRCA1P38398 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC30.79■■■□□ 2.52
BRCA1P38398 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC30.78■■■□□ 2.52
BRCA1P38398 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC30.77■■■□□ 2.52
BRCA1P38398 AP004833.2-201ENST00000532228 1454 ntBASIC30.76■■■□□ 2.51
BRCA1P38398 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC30.75■■■□□ 2.51
BRCA1P38398 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
BRCA1P38398 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC30.74■■■□□ 2.51
BRCA1P38398 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC30.74■■■□□ 2.51
BRCA1P38398 UNC93B8-201ENST00000511903 705 ntBASIC30.74■■■□□ 2.51
BRCA1P38398 AC131281.2-201ENST00000520478 145 ntBASIC30.74■■■□□ 2.51
BRCA1P38398 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC30.74■■■□□ 2.51
BRCA1P38398 AC018755.3-202ENST00000596210 929 ntBASIC30.74■■■□□ 2.51
BRCA1P38398 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC30.74■■■□□ 2.51
BRCA1P38398 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC30.73■■■□□ 2.51
BRCA1P38398 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
BRCA1P38398 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
BRCA1P38398 KRT16P3-201ENST00000439127 1283 ntBASIC30.72■■■□□ 2.51
BRCA1P38398 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC30.72■■■□□ 2.51
BRCA1P38398 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
BRCA1P38398 PEMT-206ENST00000435340 960 ntTSL 5 BASIC30.71■■■□□ 2.51
BRCA1P38398 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC30.71■■■□□ 2.51
BRCA1P38398 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC30.71■■■□□ 2.51
BRCA1P38398 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
BRCA1P38398 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
BRCA1P38398 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
BRCA1P38398 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
BRCA1P38398 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC30.7■■■□□ 2.5
BRCA1P38398 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
BRCA1P38398 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC30.69■■■□□ 2.5
BRCA1P38398 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
BRCA1P38398 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
BRCA1P38398 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
BRCA1P38398 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC30.69■■■□□ 2.5
BRCA1P38398 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC30.69■■■□□ 2.5
BRCA1P38398 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
BRCA1P38398 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC30.68■■■□□ 2.5
BRCA1P38398 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
BRCA1P38398 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC30.68■■■□□ 2.5
BRCA1P38398 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
BRCA1P38398 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC30.67■■■□□ 2.5
BRCA1P38398 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC30.67■■■□□ 2.5
BRCA1P38398 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
BRCA1P38398 AC087393.1-201ENST00000582896 145 ntBASIC30.67■■■□□ 2.5
BRCA1P38398 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
BRCA1P38398 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
BRCA1P38398 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
BRCA1P38398 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
BRCA1P38398 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC30.65■■■□□ 2.5
BRCA1P38398 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
BRCA1P38398 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
BRCA1P38398 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
BRCA1P38398 MIR4787-201ENST00000607364 84 ntBASIC30.64■■■□□ 2.5
BRCA1P38398 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC30.63■■■□□ 2.49
BRCA1P38398 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC30.63■■■□□ 2.49
BRCA1P38398 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC30.63■■■□□ 2.49
BRCA1P38398 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC30.63■■■□□ 2.49
BRCA1P38398 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC30.62■■■□□ 2.49
BRCA1P38398 BX664725.1-201ENST00000438252 379 ntBASIC30.62■■■□□ 2.49
BRCA1P38398 LONRF2P2-201ENST00000439212 571 ntBASIC30.62■■■□□ 2.49
BRCA1P38398 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC30.62■■■□□ 2.49
BRCA1P38398 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC30.62■■■□□ 2.49
BRCA1P38398 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC30.62■■■□□ 2.49
BRCA1P38398 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
BRCA1P38398 AL359504.2-201ENST00000605506 1601 ntBASIC30.61■■■□□ 2.49
BRCA1P38398 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
BRCA1P38398 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC30.61■■■□□ 2.49
BRCA1P38398 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC30.6■■■□□ 2.49
BRCA1P38398 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC30.6■■■□□ 2.49
BRCA1P38398 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
BRCA1P38398 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC30.59■■■□□ 2.49
BRCA1P38398 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
BRCA1P38398 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC30.58■■■□□ 2.49
BRCA1P38398 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
BRCA1P38398 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC30.58■■■□□ 2.49
BRCA1P38398 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC30.58■■■□□ 2.49
BRCA1P38398 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC30.58■■■□□ 2.49
BRCA1P38398 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
BRCA1P38398 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC30.56■■■□□ 2.48
BRCA1P38398 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
BRCA1P38398 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC30.55■■■□□ 2.48
BRCA1P38398 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC30.55■■■□□ 2.48
BRCA1P38398 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
BRCA1P38398 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC30.55■■■□□ 2.48
BRCA1P38398 PRR5-202ENST00000336985 1878 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
BRCA1P38398 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC30.55■■■□□ 2.48
BRCA1P38398 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
BRCA1P38398 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC30.54■■■□□ 2.48
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms