Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC25.27■■□□□ 1.64
PDGFBP01127 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC25.27■■□□□ 1.64
PDGFBP01127 RALB-208ENST00000631312 311 ntTSL 5 BASIC25.27■■□□□ 1.64
PDGFBP01127 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC25.26■■□□□ 1.63
PDGFBP01127 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC25.26■■□□□ 1.63
PDGFBP01127 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC25.26■■□□□ 1.63
PDGFBP01127 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
PDGFBP01127 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC25.25■■□□□ 1.63
PDGFBP01127 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
PDGFBP01127 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
PDGFBP01127 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
PDGFBP01127 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC25.24■■□□□ 1.63
PDGFBP01127 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC25.24■■□□□ 1.63
PDGFBP01127 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
PDGFBP01127 UNC93B8-201ENST00000511903 705 ntBASIC25.24■■□□□ 1.63
PDGFBP01127 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC25.24■■□□□ 1.63
PDGFBP01127 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC25.24■■□□□ 1.63
PDGFBP01127 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
PDGFBP01127 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC25.24■■□□□ 1.63
PDGFBP01127 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
PDGFBP01127 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC25.23■■□□□ 1.63
PDGFBP01127 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC25.23■■□□□ 1.63
PDGFBP01127 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC25.23■■□□□ 1.63
PDGFBP01127 AC019171.1-201ENST00000601251 1056 ntBASIC25.23■■□□□ 1.63
PDGFBP01127 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC25.23■■□□□ 1.63
PDGFBP01127 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
PDGFBP01127 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC25.23■■□□□ 1.63
PDGFBP01127 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
PDGFBP01127 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC25.22■■□□□ 1.63
PDGFBP01127 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
PDGFBP01127 AL139246.5-201ENST00000606645 996 ntBASIC25.22■■□□□ 1.63
PDGFBP01127 MIR4787-201ENST00000607364 84 ntBASIC25.22■■□□□ 1.63
PDGFBP01127 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC25.22■■□□□ 1.63
PDGFBP01127 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC25.22■■□□□ 1.63
PDGFBP01127 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC25.21■■□□□ 1.63
PDGFBP01127 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
PDGFBP01127 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC25.21■■□□□ 1.63
PDGFBP01127 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC25.21■■□□□ 1.63
PDGFBP01127 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC25.21■■□□□ 1.63
PDGFBP01127 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
PDGFBP01127 NALT1-201ENST00000429224 738 ntTSL 5 BASIC25.2■■□□□ 1.62
PDGFBP01127 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC25.2■■□□□ 1.62
PDGFBP01127 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
PDGFBP01127 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC25.2■■□□□ 1.62
PDGFBP01127 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
PDGFBP01127 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
PDGFBP01127 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
PDGFBP01127 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC25.18■■□□□ 1.62
PDGFBP01127 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC25.18■■□□□ 1.62
PDGFBP01127 LONRF2P2-201ENST00000439212 571 ntBASIC25.18■■□□□ 1.62
PDGFBP01127 KRT125P-201ENST00000546827 989 ntBASIC25.18■■□□□ 1.62
PDGFBP01127 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
PDGFBP01127 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
PDGFBP01127 KRT16P3-201ENST00000439127 1283 ntBASIC25.17■■□□□ 1.62
PDGFBP01127 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
PDGFBP01127 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
PDGFBP01127 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
PDGFBP01127 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC25.16■■□□□ 1.62
PDGFBP01127 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
PDGFBP01127 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
PDGFBP01127 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC25.15■■□□□ 1.62
PDGFBP01127 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
PDGFBP01127 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC25.15■■□□□ 1.62
PDGFBP01127 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC25.15■■□□□ 1.62
PDGFBP01127 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
PDGFBP01127 AC087393.1-201ENST00000582896 145 ntBASIC25.15■■□□□ 1.62
PDGFBP01127 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC25.15■■□□□ 1.62
PDGFBP01127 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
PDGFBP01127 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
PDGFBP01127 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC25.14■■□□□ 1.62
PDGFBP01127 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
PDGFBP01127 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
PDGFBP01127 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC25.14■■□□□ 1.62
PDGFBP01127 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC25.14■■□□□ 1.62
PDGFBP01127 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC25.13■■□□□ 1.61
PDGFBP01127 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC25.13■■□□□ 1.61
PDGFBP01127 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC25.13■■□□□ 1.61
PDGFBP01127 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC25.13■■□□□ 1.61
PDGFBP01127 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC25.13■■□□□ 1.61
PDGFBP01127 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC25.12■■□□□ 1.61
PDGFBP01127 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
PDGFBP01127 BX664725.1-201ENST00000438252 379 ntBASIC25.11■■□□□ 1.61
PDGFBP01127 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC25.11■■□□□ 1.61
PDGFBP01127 TRIR-202ENST00000588213 841 ntTSL 3 BASIC25.11■■□□□ 1.61
PDGFBP01127 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
PDGFBP01127 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC25.11■■□□□ 1.61
PDGFBP01127 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
PDGFBP01127 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC25.1■■□□□ 1.61
PDGFBP01127 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC25.1■■□□□ 1.61
PDGFBP01127 AL359504.2-201ENST00000605506 1601 ntBASIC25.1■■□□□ 1.61
PDGFBP01127 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
PDGFBP01127 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
PDGFBP01127 AP004833.2-201ENST00000532228 1454 ntBASIC25.09■■□□□ 1.61
PDGFBP01127 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC25.09■■□□□ 1.61
PDGFBP01127 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC25.09■■□□□ 1.61
PDGFBP01127 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
PDGFBP01127 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC25.09■■□□□ 1.61
PDGFBP01127 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC25.09■■□□□ 1.61
PDGFBP01127 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC25.09■■□□□ 1.61
PDGFBP01127 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms