Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC27.78■■■□□ 2.04
MSH4O15457 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC27.78■■■□□ 2.04
MSH4O15457 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC27.77■■■□□ 2.04
MSH4O15457 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
MSH4O15457 HYI-213ENST00000583037 1322 ntTSL 5 BASIC27.77■■■□□ 2.04
MSH4O15457 PFN2-211ENST00000489155 636 ntTSL 4 BASIC27.77■■■□□ 2.04
MSH4O15457 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC27.77■■■□□ 2.04
MSH4O15457 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC27.77■■■□□ 2.04
MSH4O15457 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC27.77■■■□□ 2.04
MSH4O15457 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC27.76■■■□□ 2.04
MSH4O15457 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
MSH4O15457 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC27.76■■■□□ 2.03
MSH4O15457 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
MSH4O15457 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC27.76■■■□□ 2.03
MSH4O15457 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC27.76■■■□□ 2.03
MSH4O15457 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC27.76■■■□□ 2.03
MSH4O15457 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC27.75■■■□□ 2.03
MSH4O15457 AC142472.1-201ENST00000612013 1741 ntBASIC27.75■■■□□ 2.03
MSH4O15457 AP004609.3-201ENST00000610705 1884 ntBASIC27.74■■■□□ 2.03
MSH4O15457 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC27.74■■■□□ 2.03
MSH4O15457 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC27.74■■■□□ 2.03
MSH4O15457 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC27.74■■■□□ 2.03
MSH4O15457 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
MSH4O15457 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
MSH4O15457 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC27.73■■■□□ 2.03
MSH4O15457 U85056.1-201ENST00000616429 682 ntBASIC27.73■■■□□ 2.03
MSH4O15457 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
MSH4O15457 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC27.72■■■□□ 2.03
MSH4O15457 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC27.72■■■□□ 2.03
MSH4O15457 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC27.72■■■□□ 2.03
MSH4O15457 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC27.72■■■□□ 2.03
MSH4O15457 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC27.71■■■□□ 2.03
MSH4O15457 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC27.71■■■□□ 2.03
MSH4O15457 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC27.71■■■□□ 2.03
MSH4O15457 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC27.71■■■□□ 2.03
MSH4O15457 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
MSH4O15457 RP9P-202ENST00000450133 1212 ntBASIC27.71■■■□□ 2.03
MSH4O15457 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC27.71■■■□□ 2.03
MSH4O15457 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
MSH4O15457 MIR3960-201ENST00000583311 91 ntBASIC27.7■■■□□ 2.02
MSH4O15457 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC27.7■■■□□ 2.02
MSH4O15457 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC27.7■■■□□ 2.02
MSH4O15457 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
MSH4O15457 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC27.69■■■□□ 2.02
MSH4O15457 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC27.69■■■□□ 2.02
MSH4O15457 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC27.69■■■□□ 2.02
MSH4O15457 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC27.68■■■□□ 2.02
MSH4O15457 AC093536.1-201ENST00000569153 554 ntBASIC27.68■■■□□ 2.02
MSH4O15457 GFER-205ENST00000569451 517 ntTSL 5 BASIC27.68■■■□□ 2.02
MSH4O15457 NTF6A-201ENST00000591175 560 ntBASIC27.68■■■□□ 2.02
MSH4O15457 AC026202.3-201ENST00000600805 1127 ntBASIC27.68■■■□□ 2.02
MSH4O15457 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC27.68■■■□□ 2.02
MSH4O15457 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC27.68■■■□□ 2.02
MSH4O15457 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC27.68■■■□□ 2.02
MSH4O15457 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
MSH4O15457 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC27.67■■■□□ 2.02
MSH4O15457 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
MSH4O15457 AC009831.1-201ENST00000580420 1582 ntBASIC27.67■■■□□ 2.02
MSH4O15457 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
MSH4O15457 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC27.67■■■□□ 2.02
MSH4O15457 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC27.67■■■□□ 2.02
MSH4O15457 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
MSH4O15457 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC27.67■■■□□ 2.02
MSH4O15457 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
MSH4O15457 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC27.66■■■□□ 2.02
MSH4O15457 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC27.66■■■□□ 2.02
MSH4O15457 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC27.66■■■□□ 2.02
MSH4O15457 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
MSH4O15457 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
MSH4O15457 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC27.66■■■□□ 2.02
MSH4O15457 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
MSH4O15457 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC27.65■■■□□ 2.02
MSH4O15457 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC27.65■■■□□ 2.02
MSH4O15457 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
MSH4O15457 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC27.65■■■□□ 2.02
MSH4O15457 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC27.65■■■□□ 2.02
MSH4O15457 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC27.64■■■□□ 2.02
MSH4O15457 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC27.64■■■□□ 2.02
MSH4O15457 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC27.64■■■□□ 2.02
MSH4O15457 AL121749.1-202ENST00000609313 2153 ntBASIC27.64■■■□□ 2.02
MSH4O15457 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC27.64■■■□□ 2.01
MSH4O15457 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC27.64■■■□□ 2.01
MSH4O15457 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC27.63■■■□□ 2.01
MSH4O15457 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC27.63■■■□□ 2.01
MSH4O15457 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
MSH4O15457 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
MSH4O15457 RAP2CP1-202ENST00000605179 643 ntBASIC27.63■■■□□ 2.01
MSH4O15457 AC133552.2-201ENST00000619106 1032 ntBASIC27.63■■■□□ 2.01
MSH4O15457 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
MSH4O15457 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC27.62■■■□□ 2.01
MSH4O15457 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC27.62■■■□□ 2.01
MSH4O15457 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC27.62■■■□□ 2.01
MSH4O15457 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC27.62■■■□□ 2.01
MSH4O15457 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC27.62■■■□□ 2.01
MSH4O15457 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC27.61■■■□□ 2.01
MSH4O15457 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC27.61■■■□□ 2.01
MSH4O15457 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC27.6■■■□□ 2.01
MSH4O15457 PKM-203ENST00000389093 2279 ntTSL 5 BASIC27.6■■■□□ 2.01
MSH4O15457 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
MSH4O15457 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC27.6■■■□□ 2.01
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms