Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC21.27■■□□□ 1
UPF3BQ9BZI7 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
UPF3BQ9BZI7 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC21.27■■□□□ 1
UPF3BQ9BZI7 REXO1L11P-201ENST00000620964 1927 ntBASIC21.27■■□□□ 1
UPF3BQ9BZI7 BOC-212ENST00000485230 2173 ntTSL 2 BASIC21.27■■□□□ 1
UPF3BQ9BZI7 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
UPF3BQ9BZI7 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
UPF3BQ9BZI7 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
UPF3BQ9BZI7 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
UPF3BQ9BZI7 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC21.26■□□□□ 0.99
UPF3BQ9BZI7 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
UPF3BQ9BZI7 KRT89P-201ENST00000620027 1478 ntBASIC21.26■□□□□ 0.99
UPF3BQ9BZI7 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
UPF3BQ9BZI7 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
UPF3BQ9BZI7 LINC00304-203ENST00000565008 1864 ntBASIC21.26■□□□□ 0.99
UPF3BQ9BZI7 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
UPF3BQ9BZI7 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
UPF3BQ9BZI7 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
UPF3BQ9BZI7 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
UPF3BQ9BZI7 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
UPF3BQ9BZI7 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
UPF3BQ9BZI7 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
UPF3BQ9BZI7 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
UPF3BQ9BZI7 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
UPF3BQ9BZI7 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
UPF3BQ9BZI7 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC21.26■□□□□ 0.99
UPF3BQ9BZI7 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC21.26■□□□□ 0.99
UPF3BQ9BZI7 AC087388.1-201ENST00000571370 1112 ntBASIC21.26■□□□□ 0.99
UPF3BQ9BZI7 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC21.26■□□□□ 0.99
UPF3BQ9BZI7 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
UPF3BQ9BZI7 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
UPF3BQ9BZI7 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
UPF3BQ9BZI7 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
UPF3BQ9BZI7 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
UPF3BQ9BZI7 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
UPF3BQ9BZI7 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
UPF3BQ9BZI7 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
UPF3BQ9BZI7 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
UPF3BQ9BZI7 AC133963.1-201ENST00000504166 1679 ntBASIC21.25■□□□□ 0.99
UPF3BQ9BZI7 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
UPF3BQ9BZI7 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
UPF3BQ9BZI7 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
UPF3BQ9BZI7 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC21.25■□□□□ 0.99
UPF3BQ9BZI7 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
UPF3BQ9BZI7 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
UPF3BQ9BZI7 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
UPF3BQ9BZI7 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
UPF3BQ9BZI7 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
UPF3BQ9BZI7 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC21.25■□□□□ 0.99
UPF3BQ9BZI7 KRT18P65-201ENST00000439811 1286 ntBASIC21.25■□□□□ 0.99
UPF3BQ9BZI7 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC21.25■□□□□ 0.99
UPF3BQ9BZI7 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
UPF3BQ9BZI7 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
UPF3BQ9BZI7 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC21.25■□□□□ 0.99
UPF3BQ9BZI7 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC21.25■□□□□ 0.99
UPF3BQ9BZI7 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC21.25■□□□□ 0.99
UPF3BQ9BZI7 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
UPF3BQ9BZI7 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
UPF3BQ9BZI7 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
UPF3BQ9BZI7 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC21.25■□□□□ 0.99
UPF3BQ9BZI7 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
UPF3BQ9BZI7 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
UPF3BQ9BZI7 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
UPF3BQ9BZI7 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
UPF3BQ9BZI7 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC21.24■□□□□ 0.99
UPF3BQ9BZI7 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC21.24■□□□□ 0.99
UPF3BQ9BZI7 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
UPF3BQ9BZI7 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
UPF3BQ9BZI7 PCDHA12-202ENST00000613593 2588 ntBASIC21.24■□□□□ 0.99
UPF3BQ9BZI7 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
UPF3BQ9BZI7 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
UPF3BQ9BZI7 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
UPF3BQ9BZI7 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC21.24■□□□□ 0.99
UPF3BQ9BZI7 AC020916.1-201ENST00000587762 1774 ntBASIC21.24■□□□□ 0.99
UPF3BQ9BZI7 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
UPF3BQ9BZI7 COPE-203ENST00000351079 907 ntTSL 2 BASIC21.24■□□□□ 0.99
UPF3BQ9BZI7 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
UPF3BQ9BZI7 AL359075.1-203ENST00000462729 1002 ntBASIC21.24■□□□□ 0.99
UPF3BQ9BZI7 NTF6B-201ENST00000591913 560 ntBASIC21.24■□□□□ 0.99
UPF3BQ9BZI7 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC21.24■□□□□ 0.99
UPF3BQ9BZI7 LITAF-220ENST00000620789 692 ntTSL 5 BASIC21.24■□□□□ 0.99
UPF3BQ9BZI7 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC21.24■□□□□ 0.99
UPF3BQ9BZI7 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
UPF3BQ9BZI7 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
UPF3BQ9BZI7 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
UPF3BQ9BZI7 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
UPF3BQ9BZI7 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
UPF3BQ9BZI7 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
UPF3BQ9BZI7 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
UPF3BQ9BZI7 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC21.24■□□□□ 0.99
UPF3BQ9BZI7 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
UPF3BQ9BZI7 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
UPF3BQ9BZI7 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
UPF3BQ9BZI7 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
UPF3BQ9BZI7 SIRPAP1-201ENST00000448467 1770 ntBASIC21.23■□□□□ 0.99
UPF3BQ9BZI7 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
UPF3BQ9BZI7 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC21.23■□□□□ 0.99
UPF3BQ9BZI7 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
UPF3BQ9BZI7 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
UPF3BQ9BZI7 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms