Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 FABP5-202ENST00000396359 986 ntTSL 5 BASIC18.41■□□□□ 0.54
HMGA1P17096 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGA1P17096 AL356488.2-201ENST00000602755 427 ntBASIC18.41■□□□□ 0.54
HMGA1P17096 AC006538.3-201ENST00000612495 578 ntBASIC18.41■□□□□ 0.54
HMGA1P17096 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC18.41■□□□□ 0.54
HMGA1P17096 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGA1P17096 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC18.41■□□□□ 0.54
HMGA1P17096 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
HMGA1P17096 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.41■□□□□ 0.54
HMGA1P17096 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HMGA1P17096 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGA1P17096 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
HMGA1P17096 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGA1P17096 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.41■□□□□ 0.54
HMGA1P17096 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGA1P17096 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HMGA1P17096 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGA1P17096 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGA1P17096 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGA1P17096 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.4■□□□□ 0.54
HMGA1P17096 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGA1P17096 AC003669.1-201ENST00000334569 611 ntBASIC18.4■□□□□ 0.54
HMGA1P17096 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC18.4■□□□□ 0.54
HMGA1P17096 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGA1P17096 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGA1P17096 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC18.4■□□□□ 0.54
HMGA1P17096 MIR940-201ENST00000401276 94 ntBASIC18.4■□□□□ 0.54
HMGA1P17096 KLF4P1-201ENST00000412782 1185 ntBASIC18.4■□□□□ 0.54
HMGA1P17096 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC18.4■□□□□ 0.54
HMGA1P17096 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC18.4■□□□□ 0.54
HMGA1P17096 STK25P1-201ENST00000585406 838 ntBASIC18.4■□□□□ 0.54
HMGA1P17096 AC006557.2-201ENST00000592985 1240 ntBASIC18.4■□□□□ 0.54
HMGA1P17096 TERC-201ENST00000602385 541 ntBASIC18.4■□□□□ 0.54
HMGA1P17096 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGA1P17096 AL589182.2-201ENST00000619332 1049 ntBASIC18.4■□□□□ 0.54
HMGA1P17096 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC18.4■□□□□ 0.54
HMGA1P17096 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGA1P17096 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGA1P17096 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGA1P17096 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HMGA1P17096 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.4■□□□□ 0.54
HMGA1P17096 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGA1P17096 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
HMGA1P17096 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.4■□□□□ 0.54
HMGA1P17096 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
HMGA1P17096 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.4■□□□□ 0.54
HMGA1P17096 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.4■□□□□ 0.54
HMGA1P17096 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HMGA1P17096 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HMGA1P17096 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
HMGA1P17096 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
HMGA1P17096 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGA1P17096 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC18.39■□□□□ 0.53
HMGA1P17096 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGA1P17096 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGA1P17096 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC18.39■□□□□ 0.53
HMGA1P17096 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
HMGA1P17096 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGA1P17096 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGA1P17096 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGA1P17096 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGA1P17096 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGA1P17096 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HMGA1P17096 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGA1P17096 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC18.39■□□□□ 0.53
HMGA1P17096 PGAM5P1-201ENST00000518923 814 ntBASIC18.39■□□□□ 0.53
HMGA1P17096 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC18.39■□□□□ 0.53
HMGA1P17096 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGA1P17096 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC18.39■□□□□ 0.53
HMGA1P17096 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC18.39■□□□□ 0.53
HMGA1P17096 ETFA-208ENST00000559602 792 ntTSL 3 BASIC18.39■□□□□ 0.53
HMGA1P17096 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
HMGA1P17096 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGA1P17096 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
HMGA1P17096 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGA1P17096 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGA1P17096 PMS2P7-201ENST00000506558 1336 ntBASIC18.39■□□□□ 0.53
HMGA1P17096 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGA1P17096 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC18.39■□□□□ 0.53
HMGA1P17096 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGA1P17096 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC18.39■□□□□ 0.53
HMGA1P17096 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC18.39■□□□□ 0.53
HMGA1P17096 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HMGA1P17096 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGA1P17096 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGA1P17096 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
HMGA1P17096 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGA1P17096 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
HMGA1P17096 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGA1P17096 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
HMGA1P17096 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HMGA1P17096 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGA1P17096 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC18.38■□□□□ 0.53
HMGA1P17096 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.38■□□□□ 0.53
HMGA1P17096 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGA1P17096 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HMGA1P17096 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC18.38■□□□□ 0.53
HMGA1P17096 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC18.38■□□□□ 0.53
HMGA1P17096 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
HMGA1P17096 AC140113.2-201ENST00000604370 208 ntBASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms