Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC13.87□□□□□ -0.19
CXCL1P09341 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC13.87□□□□□ -0.19
CXCL1P09341 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC13.87□□□□□ -0.19
CXCL1P09341 PHB2-213ENST00000546111 858 ntTSL 2 BASIC13.87□□□□□ -0.19
CXCL1P09341 PNN-205ENST00000556530 601 ntTSL 2 BASIC13.87□□□□□ -0.19
CXCL1P09341 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CXCL1P09341 AC105036.2-201ENST00000569468 176 ntBASIC13.87□□□□□ -0.19
CXCL1P09341 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC13.87□□□□□ -0.19
CXCL1P09341 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CXCL1P09341 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
CXCL1P09341 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CXCL1P09341 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
CXCL1P09341 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CXCL1P09341 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CXCL1P09341 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CXCL1P09341 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC13.87□□□□□ -0.19
CXCL1P09341 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CXCL1P09341 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CXCL1P09341 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CXCL1P09341 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CXCL1P09341 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CXCL1P09341 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
CXCL1P09341 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CXCL1P09341 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC13.86□□□□□ -0.19
CXCL1P09341 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC13.86□□□□□ -0.19
CXCL1P09341 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
CXCL1P09341 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CXCL1P09341 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC13.86□□□□□ -0.19
CXCL1P09341 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC13.86□□□□□ -0.19
CXCL1P09341 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CXCL1P09341 KRT18P55-202ENST00000578578 1546 ntBASIC13.86□□□□□ -0.19
CXCL1P09341 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CXCL1P09341 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CXCL1P09341 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
CXCL1P09341 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC13.86□□□□□ -0.19
CXCL1P09341 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CXCL1P09341 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
CXCL1P09341 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CXCL1P09341 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
CXCL1P09341 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CXCL1P09341 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CXCL1P09341 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC13.86□□□□□ -0.19
CXCL1P09341 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC13.86□□□□□ -0.19
CXCL1P09341 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC13.86□□□□□ -0.19
CXCL1P09341 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CXCL1P09341 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC13.86□□□□□ -0.19
CXCL1P09341 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC13.86□□□□□ -0.19
CXCL1P09341 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC13.86□□□□□ -0.19
CXCL1P09341 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC13.86□□□□□ -0.19
CXCL1P09341 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CXCL1P09341 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
CXCL1P09341 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC13.86□□□□□ -0.19
CXCL1P09341 AC068587.9-201ENST00000641814 219 ntBASIC13.86□□□□□ -0.19
CXCL1P09341 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CXCL1P09341 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC13.86□□□□□ -0.19
CXCL1P09341 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
CXCL1P09341 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
CXCL1P09341 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CXCL1P09341 RCC2P6-201ENST00000526625 1557 ntBASIC13.86□□□□□ -0.19
CXCL1P09341 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
CXCL1P09341 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CXCL1P09341 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC13.86□□□□□ -0.19
CXCL1P09341 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CXCL1P09341 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CXCL1P09341 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CXCL1P09341 AL513523.2-202ENST00000427283 2040 ntBASIC13.86□□□□□ -0.19
CXCL1P09341 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CXCL1P09341 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CXCL1P09341 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC13.86□□□□□ -0.19
CXCL1P09341 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
CXCL1P09341 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CXCL1P09341 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CXCL1P09341 AC144831.1-201ENST00000573312 2656 ntBASIC13.86□□□□□ -0.19
CXCL1P09341 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CXCL1P09341 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
CXCL1P09341 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
CXCL1P09341 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
CXCL1P09341 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CXCL1P09341 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CXCL1P09341 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
CXCL1P09341 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
CXCL1P09341 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CXCL1P09341 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CXCL1P09341 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CXCL1P09341 AC060834.1-201ENST00000443027 2032 ntBASIC13.85□□□□□ -0.19
CXCL1P09341 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
CXCL1P09341 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC13.85□□□□□ -0.19
CXCL1P09341 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC13.85□□□□□ -0.19
CXCL1P09341 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CXCL1P09341 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC13.85□□□□□ -0.19
CXCL1P09341 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CXCL1P09341 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CXCL1P09341 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC13.85□□□□□ -0.19
CXCL1P09341 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC13.85□□□□□ -0.19
CXCL1P09341 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
CXCL1P09341 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
CXCL1P09341 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC13.85□□□□□ -0.19
CXCL1P09341 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC13.85□□□□□ -0.19
CXCL1P09341 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC13.85□□□□□ -0.19
CXCL1P09341 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC13.85□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms