Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC14.42□□□□□ -0.1
HMGB3O15347 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC14.42□□□□□ -0.1
HMGB3O15347 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGB3O15347 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC14.42□□□□□ -0.1
HMGB3O15347 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC14.42□□□□□ -0.1
HMGB3O15347 PLD4-205ENST00000553861 667 ntTSL 2 BASIC14.42□□□□□ -0.1
HMGB3O15347 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC14.42□□□□□ -0.1
HMGB3O15347 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
HMGB3O15347 AC133552.2-202ENST00000575694 574 ntBASIC14.42□□□□□ -0.1
HMGB3O15347 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC14.42□□□□□ -0.1
HMGB3O15347 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC14.42□□□□□ -0.1
HMGB3O15347 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGB3O15347 AC087623.3-201ENST00000607047 1098 ntBASIC14.42□□□□□ -0.1
HMGB3O15347 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC14.42□□□□□ -0.1
HMGB3O15347 HLA-A-209ENST00000638375 975 ntBASIC14.42□□□□□ -0.1
HMGB3O15347 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC14.42□□□□□ -0.1
HMGB3O15347 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGB3O15347 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGB3O15347 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC14.42□□□□□ -0.1
HMGB3O15347 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC14.42□□□□□ -0.1
HMGB3O15347 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGB3O15347 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC14.42□□□□□ -0.1
HMGB3O15347 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGB3O15347 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC14.42□□□□□ -0.1
HMGB3O15347 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
HMGB3O15347 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
HMGB3O15347 PLXNA1-201ENST00000393409 9066 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGB3O15347 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
HMGB3O15347 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HMGB3O15347 LDLRAD4-203ENST00000399848 8633 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HMGB3O15347 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGB3O15347 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGB3O15347 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC14.41□□□□□ -0.1
HMGB3O15347 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGB3O15347 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC14.41□□□□□ -0.1
HMGB3O15347 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC14.41□□□□□ -0.1
HMGB3O15347 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
HMGB3O15347 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
HMGB3O15347 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HMGB3O15347 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC14.41□□□□□ -0.1
HMGB3O15347 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HMGB3O15347 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HMGB3O15347 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HMGB3O15347 KCP-203ENST00000610776 5108 ntTSL 5 BASIC14.41□□□□□ -0.1
HMGB3O15347 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGB3O15347 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGB3O15347 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HMGB3O15347 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC14.41□□□□□ -0.1
HMGB3O15347 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
HMGB3O15347 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HMGB3O15347 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGB3O15347 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGB3O15347 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGB3O15347 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGB3O15347 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HMGB3O15347 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC14.41□□□□□ -0.1
HMGB3O15347 AC004911.1-201ENST00000416316 871 ntBASIC14.41□□□□□ -0.1
HMGB3O15347 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC14.41□□□□□ -0.1
HMGB3O15347 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC14.41□□□□□ -0.1
HMGB3O15347 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC14.41□□□□□ -0.1
HMGB3O15347 REXO2-208ENST00000539754 791 ntTSL 2 BASIC14.41□□□□□ -0.1
HMGB3O15347 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HMGB3O15347 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC14.41□□□□□ -0.1
HMGB3O15347 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HMGB3O15347 AC092368.3-202ENST00000574180 1591 ntBASIC14.41□□□□□ -0.1
HMGB3O15347 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
HMGB3O15347 SBF1P1-201ENST00000444527 5631 ntBASIC14.41□□□□□ -0.1
HMGB3O15347 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC14.41□□□□□ -0.1
HMGB3O15347 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HMGB3O15347 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
HMGB3O15347 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HMGB3O15347 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
HMGB3O15347 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGB3O15347 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
HMGB3O15347 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGB3O15347 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HMGB3O15347 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
HMGB3O15347 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
HMGB3O15347 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
HMGB3O15347 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC14.41□□□□□ -0.1
HMGB3O15347 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC14.41□□□□□ -0.1
HMGB3O15347 KRT8P41-201ENST00000533985 1514 ntBASIC14.41□□□□□ -0.1
HMGB3O15347 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HMGB3O15347 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGB3O15347 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC14.4□□□□□ -0.1
HMGB3O15347 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGB3O15347 ADAMTS5-201ENST00000284987 9056 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGB3O15347 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGB3O15347 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGB3O15347 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HMGB3O15347 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC14.4□□□□□ -0.1
HMGB3O15347 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC14.4□□□□□ -0.1
HMGB3O15347 ME3-201ENST00000323418 1068 ntTSL 5 BASIC14.4□□□□□ -0.1
HMGB3O15347 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGB3O15347 ABHD17AP6-201ENST00000458502 1044 ntBASIC14.4□□□□□ -0.1
HMGB3O15347 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGB3O15347 RHOD-202ENST00000532559 538 ntTSL 3 BASIC14.4□□□□□ -0.1
HMGB3O15347 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
HMGB3O15347 MARS-234ENST00000630571 216 ntTSL 5 BASIC14.4□□□□□ -0.1
HMGB3O15347 MARS-235ENST00000630803 183 ntTSL 3 BASIC14.4□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms