Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL11A1P12107 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL11A1P12107 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC20.22■□□□□ 0.83
COL11A1P12107 AL049757.1-201ENST00000616842 1596 ntBASIC20.22■□□□□ 0.83
COL11A1P12107 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL11A1P12107 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
COL11A1P12107 AL020989.1-201ENST00000422979 469 ntBASIC20.22■□□□□ 0.83
COL11A1P12107 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL11A1P12107 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL11A1P12107 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC20.22■□□□□ 0.83
COL11A1P12107 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL11A1P12107 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL11A1P12107 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL11A1P12107 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL11A1P12107 AC018445.3-201ENST00000624177 1945 ntBASIC20.22■□□□□ 0.83
COL11A1P12107 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC20.22■□□□□ 0.83
COL11A1P12107 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC20.21■□□□□ 0.83
COL11A1P12107 HARS-201ENST00000307633 1780 ntTSL 2 BASIC20.21■□□□□ 0.83
COL11A1P12107 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC20.21■□□□□ 0.83
COL11A1P12107 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC20.21■□□□□ 0.83
COL11A1P12107 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC20.21■□□□□ 0.83
COL11A1P12107 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL11A1P12107 ACTG1P4-201ENST00000425123 1122 ntBASIC20.21■□□□□ 0.83
COL11A1P12107 HMGN1P19-201ENST00000436976 333 ntBASIC20.21■□□□□ 0.83
COL11A1P12107 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL11A1P12107 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC20.21■□□□□ 0.83
COL11A1P12107 AC064836.3-201ENST00000607928 673 ntBASIC20.21■□□□□ 0.83
COL11A1P12107 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL11A1P12107 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
COL11A1P12107 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
COL11A1P12107 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL11A1P12107 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC20.21■□□□□ 0.83
COL11A1P12107 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
COL11A1P12107 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC20.21■□□□□ 0.83
COL11A1P12107 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL11A1P12107 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL11A1P12107 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL11A1P12107 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL11A1P12107 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC20.21■□□□□ 0.83
COL11A1P12107 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL11A1P12107 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL11A1P12107 S100A2-206ENST00000497140 697 ntTSL 2 BASIC20.2■□□□□ 0.82
COL11A1P12107 AC010654.1-201ENST00000615722 808 ntBASIC20.2■□□□□ 0.82
COL11A1P12107 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL11A1P12107 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL11A1P12107 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC20.2■□□□□ 0.82
COL11A1P12107 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL11A1P12107 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL11A1P12107 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL11A1P12107 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC20.2■□□□□ 0.82
COL11A1P12107 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL11A1P12107 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC20.2■□□□□ 0.82
COL11A1P12107 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL11A1P12107 IMP4-203ENST00000409935 958 ntTSL 5 BASIC20.2■□□□□ 0.82
COL11A1P12107 RPS8P6-201ENST00000426177 609 ntBASIC20.2■□□□□ 0.82
COL11A1P12107 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
COL11A1P12107 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC20.2■□□□□ 0.82
COL11A1P12107 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC20.2■□□□□ 0.82
COL11A1P12107 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC20.2■□□□□ 0.82
COL11A1P12107 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL11A1P12107 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL11A1P12107 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC20.2■□□□□ 0.82
COL11A1P12107 AC009336.1-201ENST00000608941 1553 ntBASIC20.2■□□□□ 0.82
COL11A1P12107 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL11A1P12107 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL11A1P12107 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC20.19■□□□□ 0.82
COL11A1P12107 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC20.19■□□□□ 0.82
COL11A1P12107 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC20.19■□□□□ 0.82
COL11A1P12107 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL11A1P12107 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL11A1P12107 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL11A1P12107 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL11A1P12107 FIS1-203ENST00000442303 631 ntTSL 3 BASIC20.19■□□□□ 0.82
COL11A1P12107 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL11A1P12107 DHDH-204ENST00000523250 634 ntTSL 5 BASIC20.19■□□□□ 0.82
COL11A1P12107 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC20.19■□□□□ 0.82
COL11A1P12107 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC20.19■□□□□ 0.82
COL11A1P12107 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.19■□□□□ 0.82
COL11A1P12107 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL11A1P12107 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL11A1P12107 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL11A1P12107 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
COL11A1P12107 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL11A1P12107 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL11A1P12107 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL11A1P12107 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC20.18■□□□□ 0.82
COL11A1P12107 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC20.18■□□□□ 0.82
COL11A1P12107 PMS2P2-201ENST00000425039 1128 ntBASIC20.18■□□□□ 0.82
COL11A1P12107 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC20.18■□□□□ 0.82
COL11A1P12107 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC20.18■□□□□ 0.82
COL11A1P12107 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC20.18■□□□□ 0.82
COL11A1P12107 AL805961.1-202ENST00000641562 540 ntBASIC20.18■□□□□ 0.82
COL11A1P12107 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
COL11A1P12107 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL11A1P12107 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL11A1P12107 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC20.18■□□□□ 0.82
COL11A1P12107 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
COL11A1P12107 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL11A1P12107 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC20.18■□□□□ 0.82
COL11A1P12107 AP000997.3-201ENST00000623333 2250 ntBASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms