Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC004449.1-201ENST00000564240 433 ntBASIC17.62■□□□□ 0.41
VPS13AQ96RL7 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VPS13AQ96RL7 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS13AQ96RL7 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC17.62■□□□□ 0.41
VPS13AQ96RL7 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
VPS13AQ96RL7 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS13AQ96RL7 FAM86GP-201ENST00000448322 971 ntBASIC17.62■□□□□ 0.41
VPS13AQ96RL7 POLD4-207ENST00000531239 584 ntTSL 2 BASIC17.62■□□□□ 0.41
VPS13AQ96RL7 SPDYE22P-201ENST00000582158 798 ntBASIC17.62■□□□□ 0.41
VPS13AQ96RL7 AL022326.1-202ENST00000641533 845 ntBASIC17.62■□□□□ 0.41
VPS13AQ96RL7 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.62■□□□□ 0.41
VPS13AQ96RL7 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VPS13AQ96RL7 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC17.62■□□□□ 0.41
VPS13AQ96RL7 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VPS13AQ96RL7 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.62■□□□□ 0.41
VPS13AQ96RL7 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS13AQ96RL7 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC17.62■□□□□ 0.41
VPS13AQ96RL7 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC17.62■□□□□ 0.41
VPS13AQ96RL7 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS13AQ96RL7 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.61■□□□□ 0.41
VPS13AQ96RL7 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC17.61■□□□□ 0.41
VPS13AQ96RL7 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
VPS13AQ96RL7 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VPS13AQ96RL7 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
VPS13AQ96RL7 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC17.61■□□□□ 0.41
VPS13AQ96RL7 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC17.61■□□□□ 0.41
VPS13AQ96RL7 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC17.61■□□□□ 0.41
VPS13AQ96RL7 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
VPS13AQ96RL7 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
VPS13AQ96RL7 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC17.61■□□□□ 0.41
VPS13AQ96RL7 AC025580.3-201ENST00000617932 1424 ntBASIC17.61■□□□□ 0.41
VPS13AQ96RL7 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC17.61■□□□□ 0.41
VPS13AQ96RL7 TFAMP1-201ENST00000412727 736 ntBASIC17.61■□□□□ 0.41
VPS13AQ96RL7 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC17.61■□□□□ 0.41
VPS13AQ96RL7 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC17.61■□□□□ 0.41
VPS13AQ96RL7 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS13AQ96RL7 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17.61■□□□□ 0.41
VPS13AQ96RL7 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS13AQ96RL7 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
VPS13AQ96RL7 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
VPS13AQ96RL7 AL627223.1-201ENST00000416693 442 ntBASIC17.61■□□□□ 0.41
VPS13AQ96RL7 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC17.61■□□□□ 0.41
VPS13AQ96RL7 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC17.61■□□□□ 0.41
VPS13AQ96RL7 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.6■□□□□ 0.41
VPS13AQ96RL7 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS13AQ96RL7 AC009102.3-201ENST00000623118 1491 ntBASIC17.6■□□□□ 0.41
VPS13AQ96RL7 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS13AQ96RL7 AC132938.5-201ENST00000624980 1813 ntBASIC17.6■□□□□ 0.41
VPS13AQ96RL7 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
VPS13AQ96RL7 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC17.6■□□□□ 0.41
VPS13AQ96RL7 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC17.6■□□□□ 0.41
VPS13AQ96RL7 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
VPS13AQ96RL7 AC004835.2-201ENST00000603762 682 ntBASIC17.6■□□□□ 0.41
VPS13AQ96RL7 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VPS13AQ96RL7 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC17.6■□□□□ 0.41
VPS13AQ96RL7 NCF1C-201ENST00000438382 1427 ntBASIC17.6■□□□□ 0.41
VPS13AQ96RL7 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.6■□□□□ 0.41
VPS13AQ96RL7 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS13AQ96RL7 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC17.6■□□□□ 0.41
VPS13AQ96RL7 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC17.6■□□□□ 0.41
VPS13AQ96RL7 AL121761.2-201ENST00000598007 1648 ntBASIC17.6■□□□□ 0.41
VPS13AQ96RL7 AC092919.2-201ENST00000623631 1645 ntBASIC17.6■□□□□ 0.41
VPS13AQ96RL7 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS13AQ96RL7 CR383656.12-201ENST00000549567 513 ntBASIC17.6■□□□□ 0.41
VPS13AQ96RL7 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC17.6■□□□□ 0.41
VPS13AQ96RL7 CYB561-217ENST00000582997 877 ntTSL 5 BASIC17.6■□□□□ 0.41
VPS13AQ96RL7 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC17.6■□□□□ 0.41
VPS13AQ96RL7 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS13AQ96RL7 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC17.6■□□□□ 0.41
VPS13AQ96RL7 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
VPS13AQ96RL7 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC17.6■□□□□ 0.41
VPS13AQ96RL7 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
VPS13AQ96RL7 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VPS13AQ96RL7 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.59■□□□□ 0.41
VPS13AQ96RL7 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VPS13AQ96RL7 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS13AQ96RL7 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VPS13AQ96RL7 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS13AQ96RL7 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC17.59■□□□□ 0.41
VPS13AQ96RL7 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VPS13AQ96RL7 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
VPS13AQ96RL7 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC17.59■□□□□ 0.41
VPS13AQ96RL7 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC17.59■□□□□ 0.41
VPS13AQ96RL7 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS13AQ96RL7 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
VPS13AQ96RL7 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC17.59■□□□□ 0.41
VPS13AQ96RL7 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS13AQ96RL7 SIRPAP1-201ENST00000448467 1770 ntBASIC17.59■□□□□ 0.41
VPS13AQ96RL7 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC17.59■□□□□ 0.41
VPS13AQ96RL7 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.59■□□□□ 0.41
VPS13AQ96RL7 AL596325.1-201ENST00000563991 1082 ntBASIC17.59■□□□□ 0.41
VPS13AQ96RL7 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC17.59■□□□□ 0.41
VPS13AQ96RL7 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC17.59■□□□□ 0.41
VPS13AQ96RL7 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS13AQ96RL7 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS13AQ96RL7 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VPS13AQ96RL7 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS13AQ96RL7 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VPS13AQ96RL7 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.59■□□□□ 0.41
VPS13AQ96RL7 HNRNPFP1-201ENST00000391730 1133 ntBASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms