Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLHC1Q8NHS4 CRAT-202ENST00000393384 973 ntTSL 2 BASIC17.25■□□□□ 0.35
CLHC1Q8NHS4 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17.25■□□□□ 0.35
CLHC1Q8NHS4 HMGA1P5-201ENST00000412453 271 ntBASIC17.25■□□□□ 0.35
CLHC1Q8NHS4 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC17.25■□□□□ 0.35
CLHC1Q8NHS4 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.25■□□□□ 0.35
CLHC1Q8NHS4 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
CLHC1Q8NHS4 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC17.25■□□□□ 0.35
CLHC1Q8NHS4 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.25■□□□□ 0.35
CLHC1Q8NHS4 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLHC1Q8NHS4 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.25■□□□□ 0.35
CLHC1Q8NHS4 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CLHC1Q8NHS4 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
CLHC1Q8NHS4 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CLHC1Q8NHS4 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLHC1Q8NHS4 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLHC1Q8NHS4 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLHC1Q8NHS4 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLHC1Q8NHS4 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLHC1Q8NHS4 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLHC1Q8NHS4 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLHC1Q8NHS4 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLHC1Q8NHS4 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.24■□□□□ 0.35
CLHC1Q8NHS4 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLHC1Q8NHS4 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC17.24■□□□□ 0.35
CLHC1Q8NHS4 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
CLHC1Q8NHS4 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.24■□□□□ 0.35
CLHC1Q8NHS4 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC17.24■□□□□ 0.35
CLHC1Q8NHS4 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC17.24■□□□□ 0.35
CLHC1Q8NHS4 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLHC1Q8NHS4 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLHC1Q8NHS4 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLHC1Q8NHS4 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC17.24■□□□□ 0.35
CLHC1Q8NHS4 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLHC1Q8NHS4 AL596275.1-201ENST00000423464 877 ntBASIC17.24■□□□□ 0.35
CLHC1Q8NHS4 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CLHC1Q8NHS4 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLHC1Q8NHS4 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC17.24■□□□□ 0.35
CLHC1Q8NHS4 MIR3917-201ENST00000580971 93 ntBASIC17.24■□□□□ 0.35
CLHC1Q8NHS4 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC17.24■□□□□ 0.35
CLHC1Q8NHS4 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.24■□□□□ 0.35
CLHC1Q8NHS4 AL157888.1-201ENST00000631930 593 ntBASIC17.24■□□□□ 0.35
CLHC1Q8NHS4 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
CLHC1Q8NHS4 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLHC1Q8NHS4 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLHC1Q8NHS4 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CLHC1Q8NHS4 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CLHC1Q8NHS4 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.24■□□□□ 0.35
CLHC1Q8NHS4 AL645608.8-201ENST00000606034 2086 ntBASIC17.24■□□□□ 0.35
CLHC1Q8NHS4 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
CLHC1Q8NHS4 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLHC1Q8NHS4 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLHC1Q8NHS4 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.23■□□□□ 0.35
CLHC1Q8NHS4 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CLHC1Q8NHS4 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLHC1Q8NHS4 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.23■□□□□ 0.35
CLHC1Q8NHS4 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CLHC1Q8NHS4 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLHC1Q8NHS4 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLHC1Q8NHS4 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLHC1Q8NHS4 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLHC1Q8NHS4 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLHC1Q8NHS4 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLHC1Q8NHS4 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLHC1Q8NHS4 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC17.23■□□□□ 0.35
CLHC1Q8NHS4 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC17.23■□□□□ 0.35
CLHC1Q8NHS4 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLHC1Q8NHS4 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLHC1Q8NHS4 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC17.23■□□□□ 0.35
CLHC1Q8NHS4 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC17.23■□□□□ 0.35
CLHC1Q8NHS4 USF2-205ENST00000594064 1179 ntTSL 2 BASIC17.23■□□□□ 0.35
CLHC1Q8NHS4 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLHC1Q8NHS4 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLHC1Q8NHS4 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.23■□□□□ 0.35
CLHC1Q8NHS4 AC141586.5-201ENST00000624546 2050 ntBASIC17.23■□□□□ 0.35
CLHC1Q8NHS4 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CLHC1Q8NHS4 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLHC1Q8NHS4 LINC01568-207ENST00000641790 1380 ntBASIC17.23■□□□□ 0.35
CLHC1Q8NHS4 AL355312.1-201ENST00000407115 2176 ntBASIC17.23■□□□□ 0.35
CLHC1Q8NHS4 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLHC1Q8NHS4 PBK-203ENST00000522944 1499 ntTSL 2 BASIC17.23■□□□□ 0.35
CLHC1Q8NHS4 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLHC1Q8NHS4 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLHC1Q8NHS4 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLHC1Q8NHS4 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.23■□□□□ 0.35
CLHC1Q8NHS4 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CLHC1Q8NHS4 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLHC1Q8NHS4 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.22■□□□□ 0.35
CLHC1Q8NHS4 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
CLHC1Q8NHS4 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
CLHC1Q8NHS4 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CLHC1Q8NHS4 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLHC1Q8NHS4 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.22■□□□□ 0.35
CLHC1Q8NHS4 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.22■□□□□ 0.35
CLHC1Q8NHS4 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
CLHC1Q8NHS4 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC17.22■□□□□ 0.35
CLHC1Q8NHS4 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
CLHC1Q8NHS4 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CLHC1Q8NHS4 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC17.22■□□□□ 0.35
CLHC1Q8NHS4 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms