Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC20.56■□□□□ 0.88
SMARCA1P28370 AC138894.3-201ENST00000603787 634 ntBASIC20.56■□□□□ 0.88
SMARCA1P28370 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SMARCA1P28370 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC20.56■□□□□ 0.88
SMARCA1P28370 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC20.56■□□□□ 0.88
SMARCA1P28370 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
SMARCA1P28370 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SMARCA1P28370 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC20.56■□□□□ 0.88
SMARCA1P28370 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC20.56■□□□□ 0.88
SMARCA1P28370 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
SMARCA1P28370 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SMARCA1P28370 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
SMARCA1P28370 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMARCA1P28370 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC20.55■□□□□ 0.88
SMARCA1P28370 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SMARCA1P28370 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC20.55■□□□□ 0.88
SMARCA1P28370 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SMARCA1P28370 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMARCA1P28370 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMARCA1P28370 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC20.55■□□□□ 0.88
SMARCA1P28370 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMARCA1P28370 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC20.55■□□□□ 0.88
SMARCA1P28370 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SMARCA1P28370 EMD-201ENST00000369835 966 ntTSL 3 BASIC20.55■□□□□ 0.88
SMARCA1P28370 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMARCA1P28370 AL450487.1-201ENST00000426799 995 ntBASIC20.55■□□□□ 0.88
SMARCA1P28370 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC20.55■□□□□ 0.88
SMARCA1P28370 GZMM-202ENST00000592501 941 ntTSL 3 BASIC20.55■□□□□ 0.88
SMARCA1P28370 AL591684.3-201ENST00000605187 298 ntBASIC20.55■□□□□ 0.88
SMARCA1P28370 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMARCA1P28370 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
SMARCA1P28370 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMARCA1P28370 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SMARCA1P28370 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SMARCA1P28370 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC20.55■□□□□ 0.88
SMARCA1P28370 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SMARCA1P28370 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SMARCA1P28370 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SMARCA1P28370 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC20.55■□□□□ 0.88
SMARCA1P28370 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC20.55■□□□□ 0.88
SMARCA1P28370 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SMARCA1P28370 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
SMARCA1P28370 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC20.54■□□□□ 0.88
SMARCA1P28370 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SMARCA1P28370 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SMARCA1P28370 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SMARCA1P28370 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SMARCA1P28370 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SMARCA1P28370 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC20.54■□□□□ 0.88
SMARCA1P28370 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC20.54■□□□□ 0.88
SMARCA1P28370 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC20.54■□□□□ 0.88
SMARCA1P28370 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
SMARCA1P28370 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC20.54■□□□□ 0.88
SMARCA1P28370 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC20.54■□□□□ 0.88
SMARCA1P28370 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SMARCA1P28370 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SMARCA1P28370 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SMARCA1P28370 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SMARCA1P28370 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
SMARCA1P28370 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
SMARCA1P28370 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SMARCA1P28370 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SMARCA1P28370 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
SMARCA1P28370 AIRN-201ENST00000601203 4374 ntBASIC20.53■□□□□ 0.88
SMARCA1P28370 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
SMARCA1P28370 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.53■□□□□ 0.88
SMARCA1P28370 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SMARCA1P28370 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SMARCA1P28370 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC20.53■□□□□ 0.88
SMARCA1P28370 NUS1P2-201ENST00000417358 873 ntBASIC20.53■□□□□ 0.88
SMARCA1P28370 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SMARCA1P28370 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC20.53■□□□□ 0.88
SMARCA1P28370 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC20.53■□□□□ 0.88
SMARCA1P28370 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC20.53■□□□□ 0.88
SMARCA1P28370 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
SMARCA1P28370 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC20.53■□□□□ 0.88
SMARCA1P28370 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC20.53■□□□□ 0.88
SMARCA1P28370 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
SMARCA1P28370 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
SMARCA1P28370 AC006116.8-202ENST00000587620 1550 ntBASIC20.53■□□□□ 0.88
SMARCA1P28370 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC20.53■□□□□ 0.88
SMARCA1P28370 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
SMARCA1P28370 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
SMARCA1P28370 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
SMARCA1P28370 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
SMARCA1P28370 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SMARCA1P28370 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
SMARCA1P28370 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC20.53■□□□□ 0.88
SMARCA1P28370 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
SMARCA1P28370 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SMARCA1P28370 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SMARCA1P28370 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
SMARCA1P28370 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC20.53■□□□□ 0.88
SMARCA1P28370 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC20.53■□□□□ 0.88
SMARCA1P28370 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SMARCA1P28370 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SMARCA1P28370 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SMARCA1P28370 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
SMARCA1P28370 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SMARCA1P28370 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms