Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA2Q9Y261 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA2Q9Y261 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC14.56□□□□□ -0.08
FOXA2Q9Y261 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA2Q9Y261 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA2Q9Y261 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA2Q9Y261 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA2Q9Y261 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
FOXA2Q9Y261 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
FOXA2Q9Y261 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA2Q9Y261 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC14.55□□□□□ -0.08
FOXA2Q9Y261 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC14.55□□□□□ -0.08
FOXA2Q9Y261 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
FOXA2Q9Y261 FST-202ENST00000396947 2538 ntTSL 5 BASIC14.55□□□□□ -0.08
FOXA2Q9Y261 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA2Q9Y261 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA2Q9Y261 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA2Q9Y261 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
FOXA2Q9Y261 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA2Q9Y261 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC14.55□□□□□ -0.08
FOXA2Q9Y261 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA2Q9Y261 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA2Q9Y261 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA2Q9Y261 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA2Q9Y261 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA2Q9Y261 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA2Q9Y261 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA2Q9Y261 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA2Q9Y261 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
FOXA2Q9Y261 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC14.55□□□□□ -0.08
FOXA2Q9Y261 RCN1P1-201ENST00000400413 996 ntBASIC14.55□□□□□ -0.08
FOXA2Q9Y261 TMPOP1-202ENST00000424642 1267 ntBASIC14.55□□□□□ -0.08
FOXA2Q9Y261 KRT18P21-201ENST00000515767 1272 ntBASIC14.55□□□□□ -0.08
FOXA2Q9Y261 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC14.55□□□□□ -0.08
FOXA2Q9Y261 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC14.55□□□□□ -0.08
FOXA2Q9Y261 RN7SL850P-201ENST00000579959 291 ntBASIC14.55□□□□□ -0.08
FOXA2Q9Y261 AL023973.1-201ENST00000624619 620 ntBASIC14.55□□□□□ -0.08
FOXA2Q9Y261 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA2Q9Y261 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA2Q9Y261 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
FOXA2Q9Y261 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA2Q9Y261 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA2Q9Y261 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA2Q9Y261 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA2Q9Y261 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA2Q9Y261 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
FOXA2Q9Y261 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 EML3-212ENST00000494176 2901 ntTSL 2 BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 EML3-216ENST00000529309 2909 ntTSL 2 BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 AC034232.1-201ENST00000506026 1064 ntBASIC14.54□□□□□ -0.08
FOXA2Q9Y261 DUTP2-201ENST00000519164 463 ntBASIC14.54□□□□□ -0.08
FOXA2Q9Y261 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 AC024243.1-201ENST00000609234 778 ntBASIC14.54□□□□□ -0.08
FOXA2Q9Y261 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
FOXA2Q9Y261 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC14.54□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms