Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC60Q8IWA6 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC60Q8IWA6 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC60Q8IWA6 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC60Q8IWA6 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC60Q8IWA6 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC60Q8IWA6 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC60Q8IWA6 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC60Q8IWA6 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC60Q8IWA6 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC60Q8IWA6 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
CCDC60Q8IWA6 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC60Q8IWA6 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC19.92■□□□□ 0.78
CCDC60Q8IWA6 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC60Q8IWA6 RBSN-204ENST00000449050 903 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC60Q8IWA6 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC19.92■□□□□ 0.78
CCDC60Q8IWA6 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
CCDC60Q8IWA6 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC60Q8IWA6 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC19.92■□□□□ 0.78
CCDC60Q8IWA6 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC60Q8IWA6 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC19.92■□□□□ 0.78
CCDC60Q8IWA6 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC60Q8IWA6 AL355877.3-201ENST00000622820 899 ntBASIC19.92■□□□□ 0.78
CCDC60Q8IWA6 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.92■□□□□ 0.78
CCDC60Q8IWA6 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC19.92■□□□□ 0.78
CCDC60Q8IWA6 EFTUD1P1-204ENST00000560401 1798 ntBASIC19.92■□□□□ 0.78
CCDC60Q8IWA6 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
CCDC60Q8IWA6 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC60Q8IWA6 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC60Q8IWA6 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC60Q8IWA6 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC60Q8IWA6 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC19.92■□□□□ 0.78
CCDC60Q8IWA6 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC60Q8IWA6 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC60Q8IWA6 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CCDC60Q8IWA6 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
CCDC60Q8IWA6 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC60Q8IWA6 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
CCDC60Q8IWA6 AP000997.3-201ENST00000623333 2250 ntBASIC19.91■□□□□ 0.78
CCDC60Q8IWA6 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC60Q8IWA6 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.91■□□□□ 0.78
CCDC60Q8IWA6 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC60Q8IWA6 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC60Q8IWA6 FAM220CP-201ENST00000395253 831 ntBASIC19.91■□□□□ 0.78
CCDC60Q8IWA6 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC60Q8IWA6 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
CCDC60Q8IWA6 FGFR3P6-201ENST00000457012 610 ntBASIC19.91■□□□□ 0.78
CCDC60Q8IWA6 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC60Q8IWA6 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC60Q8IWA6 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC60Q8IWA6 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
CCDC60Q8IWA6 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC60Q8IWA6 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC60Q8IWA6 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
CCDC60Q8IWA6 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
CCDC60Q8IWA6 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC19.91■□□□□ 0.78
CCDC60Q8IWA6 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC60Q8IWA6 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
CCDC60Q8IWA6 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
CCDC60Q8IWA6 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC60Q8IWA6 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC60Q8IWA6 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
CCDC60Q8IWA6 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC60Q8IWA6 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC60Q8IWA6 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC60Q8IWA6 RBM17P3-201ENST00000417687 1192 ntBASIC19.9■□□□□ 0.78
CCDC60Q8IWA6 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC19.9■□□□□ 0.78
CCDC60Q8IWA6 ABCD1P5-201ENST00000445663 754 ntBASIC19.9■□□□□ 0.78
CCDC60Q8IWA6 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
CCDC60Q8IWA6 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
CCDC60Q8IWA6 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC60Q8IWA6 AP005117.1-201ENST00000584346 1413 ntBASIC19.9■□□□□ 0.78
CCDC60Q8IWA6 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC60Q8IWA6 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC60Q8IWA6 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC60Q8IWA6 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC19.9■□□□□ 0.78
CCDC60Q8IWA6 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC60Q8IWA6 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC60Q8IWA6 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
CCDC60Q8IWA6 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC60Q8IWA6 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC19.9■□□□□ 0.78
CCDC60Q8IWA6 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CCDC60Q8IWA6 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC60Q8IWA6 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC60Q8IWA6 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC60Q8IWA6 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC60Q8IWA6 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC60Q8IWA6 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC60Q8IWA6 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
CCDC60Q8IWA6 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC60Q8IWA6 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC19.89■□□□□ 0.77
CCDC60Q8IWA6 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC19.89■□□□□ 0.77
CCDC60Q8IWA6 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC60Q8IWA6 CTNS-203ENST00000399306 803 ntTSL 3 BASIC19.89■□□□□ 0.77
CCDC60Q8IWA6 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC60Q8IWA6 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC19.89■□□□□ 0.77
CCDC60Q8IWA6 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
CCDC60Q8IWA6 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
CCDC60Q8IWA6 MTDHP3-201ENST00000594186 672 ntBASIC19.89■□□□□ 0.77
CCDC60Q8IWA6 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms