Protein–RNA interactions for Protein: P78406

RAE1, mRNA export factor, humanhuman

Known RBP Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAE1P78406 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
RAE1P78406 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
RAE1P78406 AC112907.2-201ENST00000448639 330 ntBASIC17.05■□□□□ 0.32
RAE1P78406 HOMER2P1-201ENST00000455653 964 ntBASIC17.05■□□□□ 0.32
RAE1P78406 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC17.05■□□□□ 0.32
RAE1P78406 VENTXP5-201ENST00000523979 775 ntBASIC17.05■□□□□ 0.32
RAE1P78406 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC17.05■□□□□ 0.32
RAE1P78406 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC17.05■□□□□ 0.32
RAE1P78406 PPOX-214ENST00000535223 664 ntTSL 3 BASIC17.05■□□□□ 0.32
RAE1P78406 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.05■□□□□ 0.32
RAE1P78406 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.05■□□□□ 0.32
RAE1P78406 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RAE1P78406 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
RAE1P78406 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
RAE1P78406 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RAE1P78406 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
RAE1P78406 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
RAE1P78406 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.05■□□□□ 0.32
RAE1P78406 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.05■□□□□ 0.32
RAE1P78406 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
RAE1P78406 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
RAE1P78406 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.05■□□□□ 0.32
RAE1P78406 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RAE1P78406 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RAE1P78406 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RAE1P78406 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RAE1P78406 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RAE1P78406 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RAE1P78406 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
RAE1P78406 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.04■□□□□ 0.32
RAE1P78406 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
RAE1P78406 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.04■□□□□ 0.32
RAE1P78406 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC17.04■□□□□ 0.32
RAE1P78406 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
RAE1P78406 LTB4R2-202ENST00000528054 3092 ntBASIC17.04■□□□□ 0.32
RAE1P78406 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.04■□□□□ 0.32
RAE1P78406 LINC00304-203ENST00000565008 1864 ntBASIC17.04■□□□□ 0.32
RAE1P78406 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RAE1P78406 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RAE1P78406 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
RAE1P78406 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC17.04■□□□□ 0.32
RAE1P78406 SPDYE13P-201ENST00000445314 798 ntBASIC17.04■□□□□ 0.32
RAE1P78406 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RAE1P78406 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RAE1P78406 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC17.04■□□□□ 0.32
RAE1P78406 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RAE1P78406 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.04■□□□□ 0.32
RAE1P78406 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.04■□□□□ 0.32
RAE1P78406 AC009154.2-201ENST00000621177 724 ntBASIC17.04■□□□□ 0.32
RAE1P78406 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RAE1P78406 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
RAE1P78406 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
RAE1P78406 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RAE1P78406 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RAE1P78406 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC17.04■□□□□ 0.32
RAE1P78406 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RAE1P78406 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.04■□□□□ 0.32
RAE1P78406 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
RAE1P78406 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RAE1P78406 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
RAE1P78406 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
RAE1P78406 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.03■□□□□ 0.32
RAE1P78406 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC17.03■□□□□ 0.32
RAE1P78406 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RAE1P78406 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
RAE1P78406 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RAE1P78406 RCN1P1-201ENST00000400413 996 ntBASIC17.03■□□□□ 0.32
RAE1P78406 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.03■□□□□ 0.32
RAE1P78406 AP003733.1-201ENST00000491725 852 ntBASIC17.03■□□□□ 0.32
RAE1P78406 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC17.03■□□□□ 0.32
RAE1P78406 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.03■□□□□ 0.32
RAE1P78406 ZNF444P1-201ENST00000559497 298 ntBASIC17.03■□□□□ 0.32
RAE1P78406 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
RAE1P78406 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC17.03■□□□□ 0.32
RAE1P78406 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC17.03■□□□□ 0.32
RAE1P78406 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC17.03■□□□□ 0.32
RAE1P78406 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC17.03■□□□□ 0.32
RAE1P78406 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RAE1P78406 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
RAE1P78406 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RAE1P78406 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
RAE1P78406 REXO1L11P-201ENST00000620964 1927 ntBASIC17.03■□□□□ 0.32
RAE1P78406 AC133963.1-201ENST00000504166 1679 ntBASIC17.03■□□□□ 0.32
RAE1P78406 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
RAE1P78406 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
RAE1P78406 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
RAE1P78406 AC141586.5-201ENST00000624546 2050 ntBASIC17.03■□□□□ 0.32
RAE1P78406 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
RAE1P78406 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
RAE1P78406 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.02■□□□□ 0.32
RAE1P78406 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
RAE1P78406 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
RAE1P78406 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.02■□□□□ 0.32
RAE1P78406 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
RAE1P78406 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
RAE1P78406 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.02■□□□□ 0.32
RAE1P78406 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
RAE1P78406 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
RAE1P78406 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC17.02■□□□□ 0.32
RAE1P78406 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms