Protein–RNA interactions for Protein: Q9UQ88

CDK11A, Cyclin-dependent kinase 11A, humanhuman

Predicted RBP Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK11AQ9UQ88 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC27.67■■■□□ 2.02
CDK11AQ9UQ88 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
CDK11AQ9UQ88 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
CDK11AQ9UQ88 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
CDK11AQ9UQ88 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
CDK11AQ9UQ88 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC27.67■■■□□ 2.02
CDK11AQ9UQ88 DUTP2-201ENST00000519164 463 ntBASIC27.67■■■□□ 2.02
CDK11AQ9UQ88 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
CDK11AQ9UQ88 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC27.67■■■□□ 2.02
CDK11AQ9UQ88 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC27.67■■■□□ 2.02
CDK11AQ9UQ88 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
CDK11AQ9UQ88 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC27.67■■■□□ 2.02
CDK11AQ9UQ88 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC27.67■■■□□ 2.02
CDK11AQ9UQ88 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
CDK11AQ9UQ88 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
CDK11AQ9UQ88 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
CDK11AQ9UQ88 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC27.66■■■□□ 2.02
CDK11AQ9UQ88 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
CDK11AQ9UQ88 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC27.66■■■□□ 2.02
CDK11AQ9UQ88 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC27.66■■■□□ 2.02
CDK11AQ9UQ88 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC27.66■■■□□ 2.02
CDK11AQ9UQ88 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
CDK11AQ9UQ88 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC27.66■■■□□ 2.02
CDK11AQ9UQ88 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC27.66■■■□□ 2.02
CDK11AQ9UQ88 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
CDK11AQ9UQ88 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC27.66■■■□□ 2.02
CDK11AQ9UQ88 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC27.66■■■□□ 2.02
CDK11AQ9UQ88 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC27.66■■■□□ 2.02
CDK11AQ9UQ88 AC004817.3-201ENST00000602957 2129 ntBASIC27.66■■■□□ 2.02
CDK11AQ9UQ88 AC073592.5-201ENST00000624854 528 ntBASIC27.66■■■□□ 2.02
CDK11AQ9UQ88 AC134684.3-201ENST00000641758 218 ntBASIC27.66■■■□□ 2.02
CDK11AQ9UQ88 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC27.66■■■□□ 2.02
CDK11AQ9UQ88 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC27.66■■■□□ 2.02
CDK11AQ9UQ88 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC27.66■■■□□ 2.02
CDK11AQ9UQ88 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC27.66■■■□□ 2.02
CDK11AQ9UQ88 AC022898.2-201ENST00000616822 1312 ntBASIC27.66■■■□□ 2.02
CDK11AQ9UQ88 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC27.66■■■□□ 2.02
CDK11AQ9UQ88 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
CDK11AQ9UQ88 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
CDK11AQ9UQ88 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC27.65■■■□□ 2.02
CDK11AQ9UQ88 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC27.65■■■□□ 2.02
CDK11AQ9UQ88 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC27.65■■■□□ 2.02
CDK11AQ9UQ88 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
CDK11AQ9UQ88 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC27.65■■■□□ 2.02
CDK11AQ9UQ88 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC27.65■■■□□ 2.02
CDK11AQ9UQ88 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
CDK11AQ9UQ88 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC27.65■■■□□ 2.02
CDK11AQ9UQ88 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC27.65■■■□□ 2.02
CDK11AQ9UQ88 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
CDK11AQ9UQ88 COPE-211ENST00000600932 1144 ntTSL 5 BASIC27.65■■■□□ 2.02
CDK11AQ9UQ88 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC27.65■■■□□ 2.02
CDK11AQ9UQ88 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
CDK11AQ9UQ88 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
CDK11AQ9UQ88 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
CDK11AQ9UQ88 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
CDK11AQ9UQ88 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC27.64■■■□□ 2.02
CDK11AQ9UQ88 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC27.64■■■□□ 2.02
CDK11AQ9UQ88 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
CDK11AQ9UQ88 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC27.64■■■□□ 2.02
CDK11AQ9UQ88 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC27.64■■■□□ 2.02
CDK11AQ9UQ88 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC27.64■■■□□ 2.02
CDK11AQ9UQ88 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC27.64■■■□□ 2.02
CDK11AQ9UQ88 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC27.64■■■□□ 2.02
CDK11AQ9UQ88 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
CDK11AQ9UQ88 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC27.64■■■□□ 2.02
CDK11AQ9UQ88 AC023274.1-201ENST00000418278 595 ntBASIC27.64■■■□□ 2.02
CDK11AQ9UQ88 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC27.64■■■□□ 2.02
CDK11AQ9UQ88 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC27.64■■■□□ 2.02
CDK11AQ9UQ88 RPS8P6-201ENST00000426177 609 ntBASIC27.64■■■□□ 2.02
CDK11AQ9UQ88 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC27.64■■■□□ 2.02
CDK11AQ9UQ88 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC27.64■■■□□ 2.02
CDK11AQ9UQ88 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC27.64■■■□□ 2.02
CDK11AQ9UQ88 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.02
CDK11AQ9UQ88 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC27.64■■■□□ 2.02
CDK11AQ9UQ88 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC27.64■■■□□ 2.01
CDK11AQ9UQ88 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC27.64■■■□□ 2.01
CDK11AQ9UQ88 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC27.64■■■□□ 2.01
CDK11AQ9UQ88 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC27.64■■■□□ 2.01
CDK11AQ9UQ88 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC27.64■■■□□ 2.01
CDK11AQ9UQ88 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC27.64■■■□□ 2.01
CDK11AQ9UQ88 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC27.63■■■□□ 2.01
CDK11AQ9UQ88 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
CDK11AQ9UQ88 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC27.63■■■□□ 2.01
CDK11AQ9UQ88 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC27.63■■■□□ 2.01
CDK11AQ9UQ88 AL020989.1-201ENST00000422979 469 ntBASIC27.63■■■□□ 2.01
CDK11AQ9UQ88 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
CDK11AQ9UQ88 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC27.63■■■□□ 2.01
CDK11AQ9UQ88 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC27.63■■■□□ 2.01
CDK11AQ9UQ88 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
CDK11AQ9UQ88 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
CDK11AQ9UQ88 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC27.63■■■□□ 2.01
CDK11AQ9UQ88 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
CDK11AQ9UQ88 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC27.63■■■□□ 2.01
CDK11AQ9UQ88 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC27.63■■■□□ 2.01
CDK11AQ9UQ88 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC27.63■■■□□ 2.01
CDK11AQ9UQ88 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
CDK11AQ9UQ88 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC27.62■■■□□ 2.01
CDK11AQ9UQ88 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC27.62■■■□□ 2.01
CDK11AQ9UQ88 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC27.62■■■□□ 2.01
CDK11AQ9UQ88 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms