Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM39Q9HCM9 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM39Q9HCM9 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.87■□□□□ 0.45
TRIM39Q9HCM9 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM39Q9HCM9 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM39Q9HCM9 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
TRIM39Q9HCM9 AC093010.1-201ENST00000473625 1624 ntBASIC17.87■□□□□ 0.45
TRIM39Q9HCM9 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
TRIM39Q9HCM9 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM39Q9HCM9 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM39Q9HCM9 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM39Q9HCM9 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC17.86■□□□□ 0.45
TRIM39Q9HCM9 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC17.86■□□□□ 0.45
TRIM39Q9HCM9 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM39Q9HCM9 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM39Q9HCM9 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.86■□□□□ 0.45
TRIM39Q9HCM9 KRT18P65-201ENST00000439811 1286 ntBASIC17.86■□□□□ 0.45
TRIM39Q9HCM9 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC17.86■□□□□ 0.45
TRIM39Q9HCM9 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM39Q9HCM9 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC17.86■□□□□ 0.45
TRIM39Q9HCM9 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.86■□□□□ 0.45
TRIM39Q9HCM9 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM39Q9HCM9 MPI-205ENST00000562606 1052 ntTSL 3 BASIC17.86■□□□□ 0.45
TRIM39Q9HCM9 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
TRIM39Q9HCM9 METTL23-204ENST00000586752 904 ntTSL 2 BASIC17.86■□□□□ 0.45
TRIM39Q9HCM9 IL11-204ENST00000590625 1028 ntTSL 2 BASIC17.86■□□□□ 0.45
TRIM39Q9HCM9 AL592071.1-201ENST00000611956 408 ntBASIC17.86■□□□□ 0.45
TRIM39Q9HCM9 AC092119.3-201ENST00000612618 583 ntBASIC17.86■□□□□ 0.45
TRIM39Q9HCM9 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC17.86■□□□□ 0.45
TRIM39Q9HCM9 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM39Q9HCM9 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM39Q9HCM9 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM39Q9HCM9 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM39Q9HCM9 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM39Q9HCM9 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM39Q9HCM9 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.86■□□□□ 0.45
TRIM39Q9HCM9 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
TRIM39Q9HCM9 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC17.86■□□□□ 0.45
TRIM39Q9HCM9 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC17.86■□□□□ 0.45
TRIM39Q9HCM9 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRIM39Q9HCM9 AC007613.1-201ENST00000572811 2597 ntBASIC17.86■□□□□ 0.45
TRIM39Q9HCM9 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC17.85■□□□□ 0.45
TRIM39Q9HCM9 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM39Q9HCM9 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
TRIM39Q9HCM9 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM39Q9HCM9 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM39Q9HCM9 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM39Q9HCM9 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM39Q9HCM9 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM39Q9HCM9 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM39Q9HCM9 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
TRIM39Q9HCM9 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM39Q9HCM9 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
TRIM39Q9HCM9 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM39Q9HCM9 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM39Q9HCM9 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM39Q9HCM9 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM39Q9HCM9 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM39Q9HCM9 HCG4P8-203ENST00000443049 980 ntBASIC17.85■□□□□ 0.45
TRIM39Q9HCM9 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC17.85■□□□□ 0.45
TRIM39Q9HCM9 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC17.85■□□□□ 0.45
TRIM39Q9HCM9 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC17.85■□□□□ 0.45
TRIM39Q9HCM9 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC17.85■□□□□ 0.45
TRIM39Q9HCM9 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM39Q9HCM9 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC17.85■□□□□ 0.45
TRIM39Q9HCM9 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC17.85■□□□□ 0.45
TRIM39Q9HCM9 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM39Q9HCM9 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.85■□□□□ 0.45
TRIM39Q9HCM9 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM39Q9HCM9 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM39Q9HCM9 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRIM39Q9HCM9 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.85■□□□□ 0.45
TRIM39Q9HCM9 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
TRIM39Q9HCM9 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM39Q9HCM9 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC17.84■□□□□ 0.45
TRIM39Q9HCM9 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM39Q9HCM9 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC17.84■□□□□ 0.45
TRIM39Q9HCM9 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM39Q9HCM9 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM39Q9HCM9 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM39Q9HCM9 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM39Q9HCM9 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC17.84■□□□□ 0.45
TRIM39Q9HCM9 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM39Q9HCM9 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM39Q9HCM9 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM39Q9HCM9 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM39Q9HCM9 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM39Q9HCM9 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM39Q9HCM9 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM39Q9HCM9 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM39Q9HCM9 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM39Q9HCM9 AC068472.1-201ENST00000474589 881 ntBASIC17.84■□□□□ 0.45
TRIM39Q9HCM9 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC17.84■□□□□ 0.45
TRIM39Q9HCM9 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
TRIM39Q9HCM9 TPSP2-201ENST00000561760 610 ntBASIC17.84■□□□□ 0.45
TRIM39Q9HCM9 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC17.84■□□□□ 0.45
TRIM39Q9HCM9 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC17.84■□□□□ 0.45
TRIM39Q9HCM9 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRIM39Q9HCM9 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC17.84■□□□□ 0.45
TRIM39Q9HCM9 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms