Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 BRD8-224ENST00000512140 2876 ntTSL 27.18□□□□□ -1.266e-11■■□□□ 13.9
UPF1Q92900 BRD8-205ENST00000418329 2912 ntTSL 56.95□□□□□ -1.36e-11■■□□□ 13.9
UPF1Q92900 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC36.62■■■■□ 3.453e-7■■□□□ 13.9
UPF1Q92900 GRK2-207ENST00000529738 500 ntTSL 228.97■■■□□ 2.233e-7■■□□□ 13.9
UPF1Q92900 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.723e-7■■□□□ 13.9
UPF1Q92900 GRK2-202ENST00000416281 4493 ntTSL 214.27□□□□□ -0.133e-7■■□□□ 13.9
UPF1Q92900 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC26.97■■□□□ 1.912e-23■■□□□ 13.9
UPF1Q92900 AK2-207ENST00000482191 599 ntTSL 216.99■□□□□ 0.312e-23■■□□□ 13.9
UPF1Q92900 CCND2-201ENST00000261254 6480 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.66e-8■■□□□ 13.9
UPF1Q92900 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC26.46■■□□□ 1.833e-7■■□□□ 13.9
UPF1Q92900 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC25.91■■□□□ 1.743e-7■■□□□ 13.9
UPF1Q92900 SAT1-203ENST00000379254 868 ntTSL 3 BASIC18.88■□□□□ 0.613e-7■■□□□ 13.9
UPF1Q92900 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.613e-7■■□□□ 13.9
UPF1Q92900 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.593e-7■■□□□ 13.9
UPF1Q92900 NPLOC4-206ENST00000571714 676 ntTSL 517.04■□□□□ 0.323e-7■■□□□ 13.9
UPF1Q92900 NAA60-207ENST00000570551 673 ntTSL 316.27■□□□□ 0.23e-7■■□□□ 13.9
UPF1Q92900 SAT1-209ENST00000489394 1135 ntTSL 216.19■□□□□ 0.183e-7■■□□□ 13.9
UPF1Q92900 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.022e-7■■□□□ 13.9
UPF1Q92900 PRPF4-201ENST00000374198 2787 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.093e-7■■□□□ 13.9
UPF1Q92900 PRPF4-202ENST00000374199 3212 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.153e-7■■□□□ 13.9
UPF1Q92900 DDAH1-201ENST00000284031 3920 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.343e-7■■□□□ 13.9
UPF1Q92900 SAT1-207ENST00000474223 1033 ntTSL 211.98□□□□□ -0.493e-7■■□□□ 13.9
UPF1Q92900 DDAH1-202ENST00000426972 4017 ntTSL 1 (best) BASIC11.45□□□□□ -0.583e-7■■□□□ 13.9
UPF1Q92900 SAT1-205ENST00000462639 826 ntTSL 210.86□□□□□ -0.673e-7■■□□□ 13.9
UPF1Q92900 UBE2N-205ENST00000550657 3018 ntTSL 2 BASIC9.27□□□□□ -0.933e-7■■□□□ 13.9
UPF1Q92900 DDAH1-203ENST00000483110 3905 ntTSL 1 (best)9.03□□□□□ -0.963e-7■■□□□ 13.9
UPF1Q92900 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC8.75□□□□□ -1.013e-7■■□□□ 13.9
UPF1Q92900 SAT1-206ENST00000463236 735 ntTSL 38.13□□□□□ -1.113e-7■■□□□ 13.9
UPF1Q92900 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC28.48■■■□□ 2.154e-7■■□□□ 13.9
UPF1Q92900 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC17.95■□□□□ 0.464e-7■■□□□ 13.9
UPF1Q92900 OAZ2-202ENST00000558194 7102 ntTSL 29.61□□□□□ -0.874e-7■■□□□ 13.9
UPF1Q92900 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC24.94■■□□□ 1.582e-11■■□□□ 13.9
UPF1Q92900 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC23.56■■□□□ 1.362e-11■■□□□ 13.9
UPF1Q92900 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC22.83■■□□□ 1.252e-11■■□□□ 13.9
UPF1Q92900 ARMC7-202ENST00000579096 1122 ntTSL 1 (best)22.52■■□□□ 1.22e-11■■□□□ 13.9
UPF1Q92900 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC21.7■■□□□ 1.065e-6■■□□□ 13.9
UPF1Q92900 SIRT2-203ENST00000381766 848 ntTSL 220.29■□□□□ 0.845e-6■■□□□ 13.9
UPF1Q92900 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.24■□□□□ 0.833e-6■■□□□ 13.9
UPF1Q92900 SIRT2-207ENST00000420440 927 ntTSL 519.98■□□□□ 0.795e-6■■□□□ 13.9
UPF1Q92900 SIRT2-210ENST00000443898 985 ntTSL 519.6■□□□□ 0.735e-6■■□□□ 13.9
UPF1Q92900 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.593e-6■■□□□ 13.9
UPF1Q92900 SIRT2-206ENST00000414941 1251 ntTSL 517.9■□□□□ 0.465e-6■■□□□ 13.9
UPF1Q92900 SIRT2-205ENST00000407552 890 ntTSL 217.75■□□□□ 0.435e-6■■□□□ 13.9
UPF1Q92900 AL162431.2-201ENST00000358073 2424 ntTSL 2 BASIC14.54□□□□□ -0.083e-6■■□□□ 13.9
UPF1Q92900 STX6-202ENST00000469135 4842 ntTSL 1 (best)8.3□□□□□ -1.083e-6■■□□□ 13.9
UPF1Q92900 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC26.06■■□□□ 1.762e-8■■□□□ 13.9
UPF1Q92900 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC25.13■■□□□ 1.612e-8■■□□□ 13.9
UPF1Q92900 GGA3-216ENST00000583282 550 ntTSL 418.48■□□□□ 0.553e-6■■□□□ 13.9
UPF1Q92900 GGA3-209ENST00000580646 829 ntTSL 414.2□□□□□ -0.143e-6■■□□□ 13.9
UPF1Q92900 GGA3-220ENST00000613421 5156 ntTSL 213.72□□□□□ -0.213e-6■■□□□ 13.9
UPF1Q92900 GGA3-213ENST00000582486 2319 ntTSL 5 BASIC12.91□□□□□ -0.343e-6■■□□□ 13.9
UPF1Q92900 GGA3-205ENST00000578348 2251 ntTSL 2 BASIC12.26□□□□□ -0.453e-6■■□□□ 13.9
UPF1Q92900 GGA3-221ENST00000614198 3438 ntTSL 211.56□□□□□ -0.563e-6■■□□□ 13.9
UPF1Q92900 GGA3-202ENST00000538886 3766 ntTSL 1 (best) BASIC11.03□□□□□ -0.643e-6■■□□□ 13.9
UPF1Q92900 GGA3-201ENST00000537686 4069 ntAPPRIS P1 TSL 1 (best) BASIC10.4□□□□□ -0.743e-6■■□□□ 13.9
UPF1Q92900 GGA3-223ENST00000621870 4034 ntTSL 1 (best)9.72□□□□□ -0.853e-6■■□□□ 13.9
UPF1Q92900 GGA3-222ENST00000621217 4181 ntTSL 29.61□□□□□ -0.873e-6■■□□□ 13.9
UPF1Q92900 WDTC1-205ENST00000491239 5149 ntTSL 213.35□□□□□ -0.273e-7■■□□□ 13.9
UPF1Q92900 WDTC1-203ENST00000447062 3115 ntTSL 211.89□□□□□ -0.513e-7■■□□□ 13.9
UPF1Q92900 TM4SF1-201ENST00000305366 1771 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.623e-10■■□□□ 13.9
UPF1Q92900 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC5.49□□□□□ -1.533e-10■■□□□ 13.9
UPF1Q92900 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.81e-9■■□□□ 13.9
UPF1Q92900 TIMM23B-201ENST00000374098 1142 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.511e-9■■□□□ 13.9
UPF1Q92900 TIMM23B-202ENST00000451577 1152 ntTSL 2 BASIC17■□□□□ 0.311e-9■■□□□ 13.9
UPF1Q92900 LINC00843-202ENST00000444438 550 ntTSL 5 BASIC14.01□□□□□ -0.171e-9■■□□□ 13.9
UPF1Q92900 TIMM23B-203ENST00000478381 2623 ntTSL 211.9□□□□□ -0.51e-9■■□□□ 13.9
UPF1Q92900 MTMR12-202ENST00000280285 4966 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.521e-9■■□□□ 13.9
UPF1Q92900 LINC00843-201ENST00000429104 562 ntTSL 59.71□□□□□ -0.861e-9■■□□□ 13.9
UPF1Q92900 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.17e-9■■□□□ 13.9
UPF1Q92900 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.427e-9■■□□□ 13.9
UPF1Q92900 VDAC1-202ENST00000395044 1807 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.097e-9■■□□□ 13.9
UPF1Q92900 STIM1-220ENST00000616714 4356 ntTSL 1 (best) BASIC13.62□□□□□ -0.237e-7■■□□□ 13.9
UPF1Q92900 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.237e-7■■□□□ 13.9
UPF1Q92900 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.427e-7■■□□□ 13.9
UPF1Q92900 AC005381.1-202ENST00000592716 574 ntTSL 510.08□□□□□ -0.85e-11■■□□□ 13.8
UPF1Q92900 ESYT2-202ENST00000275418 3251 ntAPPRIS ALT2 TSL 520.74■□□□□ 0.916e-7■■□□□ 13.8
UPF1Q92900 ESYT2-203ENST00000435514 2090 ntTSL 219.19■□□□□ 0.666e-7■■□□□ 13.8
UPF1Q92900 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.276e-7■■□□□ 13.8
UPF1Q92900 ZNF106-205ENST00000565611 5081 ntTSL 1 (best) BASIC13.17□□□□□ -0.33e-7■■□□□ 13.8
UPF1Q92900 ST3GAL2-204ENST00000566097 904 ntTSL 239.59■■■■□ 3.931e-8■■□□□ 13.8
UPF1Q92900 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.072e-7■■□□□ 13.8
UPF1Q92900 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC25.82■■□□□ 1.723e-6■■□□□ 13.8
UPF1Q92900 ANP32A-201ENST00000267918 1084 ntTSL 320.86■□□□□ 0.932e-30■■□□□ 13.8
UPF1Q92900 CELF1-203ENST00000361904 1580 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.082e-8■■□□□ 13.8
UPF1Q92900 CELF1-202ENST00000358597 2108 ntAPPRIS ALT1 TSL 1 (best) BASIC10.94□□□□□ -0.662e-8■■□□□ 13.8
UPF1Q92900 CELF1-205ENST00000395292 2191 ntAPPRIS P4 TSL 1 (best) BASIC9.76□□□□□ -0.852e-8■■□□□ 13.8
UPF1Q92900 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC21.06■□□□□ 0.962e-6■■□□□ 13.8
UPF1Q92900 PI4KB-203ENST00000368874 3934 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.292e-6■■□□□ 13.8
UPF1Q92900 PI4KB-202ENST00000368873 3340 ntTSL 2 BASIC12.55□□□□□ -0.42e-6■■□□□ 13.8
UPF1Q92900 PI4KB-204ENST00000368875 3983 ntAPPRIS P3 TSL 5 BASIC11.67□□□□□ -0.542e-6■■□□□ 13.8
UPF1Q92900 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.025e-10■■□□□ 13.8
UPF1Q92900 TRA2B-207ENST00000463328 2780 ntTSL 26.11□□□□□ -1.435e-10■■□□□ 13.8
UPF1Q92900 TRA2B-215ENST00000492417 4141 ntTSL 1 (best)5.35□□□□□ -1.555e-10■■□□□ 13.8
UPF1Q92900 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.08■□□□□ 0.641e-6■■□□□ 13.8
UPF1Q92900 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.16■□□□□ 0.51e-6■■□□□ 13.8
UPF1Q92900 GRB10-203ENST00000398810 4785 ntTSL 1 (best) BASIC10.08□□□□□ -0.81e-6■■□□□ 13.8
UPF1Q92900 GRB10-204ENST00000398812 4705 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.861e-6■■□□□ 13.8
UPF1Q92900 GRB10-207ENST00000402578 4760 ntTSL 1 (best) BASIC8.82□□□□□ -11e-6■■□□□ 13.8
UPF1Q92900 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.582e-9■■□□□ 13.8
UPF1Q92900 PTMS-203ENST00000538057 976 ntTSL 231.17■■■□□ 2.582e-9■■□□□ 13.8
Retrieved 100 of 15,879 protein–RNA pairs in 99.3 ms