RNA–Protein interactions for RNA: ENST00000492417.5

TRA2B-215, Transcript of transformer 2 beta homolog, humanhuman

TSL 1 (best)

Gene TRA2B, Length 4,141 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRA2B-215ENST00000492417 NISCHQ9Y2I1 1504 aa9.17□□□□□ -0.94
TRA2B-215ENST00000492417 DCAF8L2P0C7V8 631 aa8.71□□□□□ -1.02
TRA2B-215ENST00000492417 SHROOM4Q9ULL8 1493 aa8.15□□□□□ -1.1
TRA2B-215ENST00000492417 ABCC9O60706 1549 aa8.1□□□□□ -1.11
TRA2B-215ENST00000492417 SUPT5HO00267 1087 aaKnown RBP7.95□□□□□ -1.14
TRA2B-215ENST00000492417 PABPN1Q86U42 306 aaKnown RBP eCLIP7.85□□□□□ -1.15
TRA2B-215ENST00000492417 CCDC180Q9P1Z9 1646 aa7.74□□□□□ -1.17
TRA2B-215ENST00000492417 CHIC1Q5VXU3 224 aa7.67□□□□□ -1.18
TRA2B-215ENST00000492417 ZCCHC6Q5VYS8 1495 aaKnown RBP7.59□□□□□ -1.19
TRA2B-215ENST00000492417 EHMT2Q96KQ7 1210 aa7.58□□□□□ -1.2
TRA2B-215ENST00000492417 SCRIBQ14160 1630 aa7.56□□□□□ -1.2
TRA2B-215ENST00000492417 RB1CC1Q8TDY2 1594 aa7.52□□□□□ -1.21
TRA2B-215ENST00000492417 FAM9AQ8IZU1 332 aaPredicted RBP7.46□□□□□ -1.21
TRA2B-215ENST00000492417 NACADO15069 1562 aa7.46□□□□□ -1.22
TRA2B-215ENST00000492417 AEBP2Q6ZN18 517 aaPredicted RBP7.39□□□□□ -1.23
TRA2B-215ENST00000492417 RANGAP1P46060 587 aaPredicted RBP7.36□□□□□ -1.23
TRA2B-215ENST00000492417 TRIM41Q8WV44 630 aa7.36□□□□□ -1.23
TRA2B-215ENST00000492417 DCAF1Q9Y4B6 1507 aa7.31□□□□□ -1.24
TRA2B-215ENST00000492417 CECR2Q9BXF3 1484 aa7.28□□□□□ -1.24
TRA2B-215ENST00000492417 TTBK1Q5TCY1 1321 aaPredicted RBP7.24□□□□□ -1.25
TRA2B-215ENST00000492417 MYO15BQ96JP2 1530 aa7.21□□□□□ -1.26
TRA2B-215ENST00000492417 UBTFP17480 764 aaKnown RBP7.21□□□□□ -1.26
TRA2B-215ENST00000492417 ATP1B4Q9UN42 357 aaPredicted RBP7.2□□□□□ -1.26
TRA2B-215ENST00000492417 RSF1Q96T23 1441 aaPredicted RBP7.2□□□□□ -1.26
TRA2B-215ENST00000492417 FBLN2P98095 1184 aa7.19□□□□□ -1.26
TRA2B-215ENST00000492417 DNAJC5BQ9UF47 199 aa7.19□□□□□ -1.26
TRA2B-215ENST00000492417 BAZ1BQ9UIG0 1483 aaKnown RBP7.17□□□□□ -1.26
TRA2B-215ENST00000492417 MROH2BQ7Z745 1585 aa7.15□□□□□ -1.27
TRA2B-215ENST00000492417 BAZ1AQ9NRL2 1556 aaPredicted RBP7.13□□□□□ -1.27
TRA2B-215ENST00000492417 LOC105371045A0A1W2PR82 267 aa7.11□□□□□ -1.27
TRA2B-215ENST00000492417 APLP2Q06481 763 aa7.1□□□□□ -1.27
TRA2B-215ENST00000492417 ERCC6Q03468 1493 aa7.08□□□□□ -1.28
TRA2B-215ENST00000492417 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.06□□□□□ -1.28
TRA2B-215ENST00000492417 HNRNPUL2Q1KMD3 747 aaKnown RBP7.06□□□□□ -1.28
TRA2B-215ENST00000492417 PPARGC1BQ86YN6 1023 aaKnown RBP7.06□□□□□ -1.28
TRA2B-215ENST00000492417 ATAD2BQ9ULI0 1458 aa7.06□□□□□ -1.28
TRA2B-215ENST00000492417 BICRAQ9NZM4 1560 aa7.05□□□□□ -1.28
TRA2B-215ENST00000492417 EIF4G1Q04637 1599 aaKnown RBP7.05□□□□□ -1.28
TRA2B-215ENST00000492417 WIZO95785 1651 aa7.04□□□□□ -1.28
TRA2B-215ENST00000492417 SMARCA2P51531 1590 aa7.02□□□□□ -1.29
TRA2B-215ENST00000492417 SMARCA4P51532 1647 aa7.01□□□□□ -1.29
TRA2B-215ENST00000492417 P3H3Q8IVL6 736 aa7.01□□□□□ -1.29
TRA2B-215ENST00000492417 ARID3CA6NKF2 412 aa7□□□□□ -1.29
TRA2B-215ENST00000492417 CCDC88BA6NC98 1476 aa7□□□□□ -1.29
TRA2B-215ENST00000492417 CC2D2AQ9P2K1 1620 aa7□□□□□ -1.29
TRA2B-215ENST00000492417 UNC13AQ9UPW8 1703 aa6.97□□□□□ -1.29
TRA2B-215ENST00000492417 CHMP7Q8WUX9 453 aaPredicted RBP6.97□□□□□ -1.29
TRA2B-215ENST00000492417 CSRNP3Q8WYN3 585 aa6.96□□□□□ -1.29
TRA2B-215ENST00000492417 CADPSQ9ULU8 1353 aa6.96□□□□□ -1.29
TRA2B-215ENST00000492417 PDS5BQ9NTI5 1447 aa6.94□□□□□ -1.3
TRA2B-215ENST00000492417 NCAPD3P42695 1498 aa6.94□□□□□ -1.3
TRA2B-215ENST00000492417 WRNQ14191 1432 aaPredicted RBP eCLIP6.93□□□□□ -1.3
TRA2B-215ENST00000492417 NESP48681 1621 aa6.93□□□□□ -1.3
TRA2B-215ENST00000492417 MYT1LQ9UL68 1186 aa6.92□□□□□ -1.3
TRA2B-215ENST00000492417 TOP2AP11388 1531 aaKnown RBP6.92□□□□□ -1.3
TRA2B-215ENST00000492417 TDRD9Q8NDG6 1382 aaKnown RBP6.9□□□□□ -1.3
TRA2B-215ENST00000492417 ITGAEP38570 1179 aa6.9□□□□□ -1.31
TRA2B-215ENST00000492417 ABCC8Q09428 1581 aa6.88□□□□□ -1.31
TRA2B-215ENST00000492417 FANCD2Q9BXW9 1451 aa6.87□□□□□ -1.31
TRA2B-215ENST00000492417 CEP164Q9UPV0 1460 aa6.86□□□□□ -1.31
TRA2B-215ENST00000492417 PCGF6Q9BYE7 350 aa6.86□□□□□ -1.31
TRA2B-215ENST00000492417 SOGA1O94964 1423 aa6.85□□□□□ -1.31
TRA2B-215ENST00000492417 CUX2O14529 1486 aa6.84□□□□□ -1.31
TRA2B-215ENST00000492417 MYT1Q01538 1121 aa6.82□□□□□ -1.32
TRA2B-215ENST00000492417 NPM1P06748 294 aaKnown RBP eCLIP6.82□□□□□ -1.32
TRA2B-215ENST00000492417 KIF27Q86VH2 1401 aa6.81□□□□□ -1.32
TRA2B-215ENST00000492417 HMGXB3Q12766 1538 aa6.79□□□□□ -1.32
TRA2B-215ENST00000492417 PELP1Q8IZL8 1130 aaKnown RBP6.79□□□□□ -1.32
TRA2B-215ENST00000492417 RAD54L2Q9Y4B4 1467 aa6.79□□□□□ -1.32
TRA2B-215ENST00000492417 FAM50AQ14320 339 aaKnown RBP6.78□□□□□ -1.32
TRA2B-215ENST00000492417 KCNH8Q96L42 1107 aa6.78□□□□□ -1.32
TRA2B-215ENST00000492417 ZNF777Q9ULD5 760 aaPredicted RBP6.78□□□□□ -1.32
TRA2B-215ENST00000492417 CFTRP13569 1480 aa6.77□□□□□ -1.33
TRA2B-215ENST00000492417 CARMIL1Q5VZK9 1371 aa6.77□□□□□ -1.33
TRA2B-215ENST00000492417 PHF23Q9BUL5 403 aaPredicted RBP6.77□□□□□ -1.33
TRA2B-215ENST00000492417 AQRO60306 1485 aaKnown RBP eCLIP6.76□□□□□ -1.332e-7■■■■□ 20.6
TRA2B-215ENST00000492417 TRHP20396 242 aaPredicted RBP6.75□□□□□ -1.33
TRA2B-215ENST00000492417 FGD5Q6ZNL6 1462 aa6.74□□□□□ -1.33
TRA2B-215ENST00000492417 CYB5RLQ6IPT4 315 aa6.74□□□□□ -1.33
TRA2B-215ENST00000492417 OSCARQ8IYS5 282 aa6.74□□□□□ -1.33
TRA2B-215ENST00000492417 PLPPR3Q6T4P5 718 aa6.73□□□□□ -1.33
TRA2B-215ENST00000492417 RUSC2Q8N2Y8 1516 aa6.73□□□□□ -1.33
TRA2B-215ENST00000492417 MRC2Q9UBG0 1479 aa6.72□□□□□ -1.33
TRA2B-215ENST00000492417 CDK11AQ9UQ88 783 aaPredicted RBP6.71□□□□□ -1.33
TRA2B-215ENST00000492417 JPH4Q96JJ6 628 aa6.7□□□□□ -1.34
TRA2B-215ENST00000492417 CLIP1P30622 1438 aa6.69□□□□□ -1.34
TRA2B-215ENST00000492417 CCER1Q8TC90 406 aaPredicted RBP6.69□□□□□ -1.34
TRA2B-215ENST00000492417 PEG3Q9GZU2 1588 aa6.69□□□□□ -1.34
TRA2B-215ENST00000492417 TOPBP1Q92547 1522 aa6.69□□□□□ -1.34
TRA2B-215ENST00000492417 GAPVD1Q14C86 1478 aa6.68□□□□□ -1.34
TRA2B-215ENST00000492417 EEA1Q15075 1411 aa6.68□□□□□ -1.34
TRA2B-215ENST00000492417 LAMC3Q9Y6N6 1575 aa6.68□□□□□ -1.34
TRA2B-215ENST00000492417 GOLGA3Q08378 1498 aa6.68□□□□□ -1.34
TRA2B-215ENST00000492417 PLEKHD1A6NEE1 506 aa6.67□□□□□ -1.34
TRA2B-215ENST00000492417 POLA1P09884 1462 aaPredicted RBP6.67□□□□□ -1.34
TRA2B-215ENST00000492417 IGF1RP08069 1367 aa6.66□□□□□ -1.34
TRA2B-215ENST00000492417 TRIM52Q96A61 297 aa6.66□□□□□ -1.34
TRA2B-215ENST00000492417 CUX1P39880 1505 aa6.66□□□□□ -1.34
TRA2B-215ENST00000492417 TRIM26Q12899 539 aaPredicted RBP6.65□□□□□ -1.35
TRA2B-215ENST00000492417 CHIC2Q9UKJ5 165 aa6.65□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms