Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HOXA9P31269 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
HOXA9P31269 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HOXA9P31269 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HOXA9P31269 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HOXA9P31269 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HOXA9P31269 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC18.7■□□□□ 0.58
HOXA9P31269 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC18.7■□□□□ 0.58
HOXA9P31269 PRYP5-201ENST00000451909 266 ntBASIC18.7■□□□□ 0.58
HOXA9P31269 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
HOXA9P31269 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC18.7■□□□□ 0.58
HOXA9P31269 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC18.7■□□□□ 0.58
HOXA9P31269 RPS29-206ENST00000557111 488 ntTSL 2 BASIC18.7■□□□□ 0.58
HOXA9P31269 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HOXA9P31269 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC18.7■□□□□ 0.58
HOXA9P31269 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
HOXA9P31269 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC18.7■□□□□ 0.58
HOXA9P31269 AL356488.2-201ENST00000602755 427 ntBASIC18.7■□□□□ 0.58
HOXA9P31269 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC18.7■□□□□ 0.58
HOXA9P31269 AD001527.2-201ENST00000622994 785 ntBASIC18.7■□□□□ 0.58
HOXA9P31269 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HOXA9P31269 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HOXA9P31269 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HOXA9P31269 AC005082.1-201ENST00000413042 2259 ntBASIC18.7■□□□□ 0.58
HOXA9P31269 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
HOXA9P31269 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
HOXA9P31269 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.7■□□□□ 0.58
HOXA9P31269 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
HOXA9P31269 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC18.69■□□□□ 0.58
HOXA9P31269 ESPNP-201ENST00000270691 2015 ntBASIC18.69■□□□□ 0.58
HOXA9P31269 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HOXA9P31269 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXA9P31269 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HOXA9P31269 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
HOXA9P31269 SIGLEC16-201ENST00000599858 1437 ntBASIC18.69■□□□□ 0.58
HOXA9P31269 IMP4-203ENST00000409935 958 ntTSL 5 BASIC18.69■□□□□ 0.58
HOXA9P31269 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC18.69■□□□□ 0.58
HOXA9P31269 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC18.69■□□□□ 0.58
HOXA9P31269 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC18.69■□□□□ 0.58
HOXA9P31269 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HOXA9P31269 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXA9P31269 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXA9P31269 AP000974.1-201ENST00000623909 2387 ntBASIC18.69■□□□□ 0.58
HOXA9P31269 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HOXA9P31269 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXA9P31269 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HOXA9P31269 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.68■□□□□ 0.58
HOXA9P31269 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXA9P31269 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXA9P31269 AC093010.1-201ENST00000473625 1624 ntBASIC18.68■□□□□ 0.58
HOXA9P31269 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HOXA9P31269 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXA9P31269 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXA9P31269 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXA9P31269 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
HOXA9P31269 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HOXA9P31269 DUTP2-201ENST00000519164 463 ntBASIC18.68■□□□□ 0.58
HOXA9P31269 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HOXA9P31269 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
HOXA9P31269 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC18.68■□□□□ 0.58
HOXA9P31269 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HOXA9P31269 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HOXA9P31269 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXA9P31269 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
HOXA9P31269 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC18.68■□□□□ 0.58
HOXA9P31269 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC18.68■□□□□ 0.58
HOXA9P31269 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC18.67■□□□□ 0.58
HOXA9P31269 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
HOXA9P31269 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
HOXA9P31269 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.67■□□□□ 0.58
HOXA9P31269 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXA9P31269 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
HOXA9P31269 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXA9P31269 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXA9P31269 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
HOXA9P31269 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC18.67■□□□□ 0.58
HOXA9P31269 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC18.67■□□□□ 0.58
HOXA9P31269 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
HOXA9P31269 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.67■□□□□ 0.58
HOXA9P31269 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXA9P31269 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXA9P31269 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXA9P31269 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXA9P31269 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXA9P31269 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
HOXA9P31269 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
HOXA9P31269 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
HOXA9P31269 KRT18P27-201ENST00000427733 1299 ntBASIC18.67■□□□□ 0.58
HOXA9P31269 AC103564.2-201ENST00000432853 1299 ntBASIC18.67■□□□□ 0.58
HOXA9P31269 KRT18P3-201ENST00000451602 1288 ntBASIC18.67■□□□□ 0.58
HOXA9P31269 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC18.67■□□□□ 0.58
HOXA9P31269 NMU-202ENST00000505262 693 ntTSL 3 BASIC18.67■□□□□ 0.58
HOXA9P31269 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC18.67■□□□□ 0.58
HOXA9P31269 UNC93B6-202ENST00000528242 690 ntBASIC18.67■□□□□ 0.58
HOXA9P31269 ETFA-208ENST00000559602 792 ntTSL 3 BASIC18.67■□□□□ 0.58
HOXA9P31269 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC18.67■□□□□ 0.58
HOXA9P31269 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC18.67■□□□□ 0.58
HOXA9P31269 AC006557.2-201ENST00000592985 1240 ntBASIC18.67■□□□□ 0.58
HOXA9P31269 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC18.67■□□□□ 0.58
HOXA9P31269 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms