Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC23.82■■□□□ 1.4
CSB-PGBD3P0DP91 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC23.82■■□□□ 1.4
CSB-PGBD3P0DP91 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC23.82■■□□□ 1.4
CSB-PGBD3P0DP91 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC23.82■■□□□ 1.4
CSB-PGBD3P0DP91 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC23.82■■□□□ 1.4
CSB-PGBD3P0DP91 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC23.82■■□□□ 1.4
CSB-PGBD3P0DP91 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
CSB-PGBD3P0DP91 AC108751.1-201ENST00000490852 363 ntBASIC23.82■■□□□ 1.4
CSB-PGBD3P0DP91 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC23.82■■□□□ 1.4
CSB-PGBD3P0DP91 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
CSB-PGBD3P0DP91 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC23.82■■□□□ 1.4
CSB-PGBD3P0DP91 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
CSB-PGBD3P0DP91 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC23.82■■□□□ 1.4
CSB-PGBD3P0DP91 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC23.82■■□□□ 1.4
CSB-PGBD3P0DP91 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
CSB-PGBD3P0DP91 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
CSB-PGBD3P0DP91 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
CSB-PGBD3P0DP91 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
CSB-PGBD3P0DP91 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CSB-PGBD3P0DP91 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
CSB-PGBD3P0DP91 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
CSB-PGBD3P0DP91 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC23.81■■□□□ 1.4
CSB-PGBD3P0DP91 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CSB-PGBD3P0DP91 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CSB-PGBD3P0DP91 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC23.81■■□□□ 1.4
CSB-PGBD3P0DP91 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CSB-PGBD3P0DP91 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CSB-PGBD3P0DP91 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
CSB-PGBD3P0DP91 SLC4A1APP2-201ENST00000424054 1259 ntBASIC23.81■■□□□ 1.4
CSB-PGBD3P0DP91 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC23.81■■□□□ 1.4
CSB-PGBD3P0DP91 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC23.81■■□□□ 1.4
CSB-PGBD3P0DP91 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC23.81■■□□□ 1.4
CSB-PGBD3P0DP91 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC23.81■■□□□ 1.4
CSB-PGBD3P0DP91 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC23.81■■□□□ 1.4
CSB-PGBD3P0DP91 AL596442.2-201ENST00000610240 980 ntBASIC23.81■■□□□ 1.4
CSB-PGBD3P0DP91 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC23.81■■□□□ 1.4
CSB-PGBD3P0DP91 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CSB-PGBD3P0DP91 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC23.81■■□□□ 1.4
CSB-PGBD3P0DP91 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CSB-PGBD3P0DP91 PMPCAP1-201ENST00000508114 1576 ntBASIC23.81■■□□□ 1.4
CSB-PGBD3P0DP91 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
CSB-PGBD3P0DP91 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC23.81■■□□□ 1.4
CSB-PGBD3P0DP91 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC23.81■■□□□ 1.4
CSB-PGBD3P0DP91 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
CSB-PGBD3P0DP91 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
CSB-PGBD3P0DP91 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CSB-PGBD3P0DP91 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
CSB-PGBD3P0DP91 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CSB-PGBD3P0DP91 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
CSB-PGBD3P0DP91 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC23.8■■□□□ 1.4
CSB-PGBD3P0DP91 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CSB-PGBD3P0DP91 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC23.8■■□□□ 1.4
CSB-PGBD3P0DP91 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC23.8■■□□□ 1.4
CSB-PGBD3P0DP91 KRT18P27-201ENST00000427733 1299 ntBASIC23.8■■□□□ 1.4
CSB-PGBD3P0DP91 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC23.8■■□□□ 1.4
CSB-PGBD3P0DP91 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CSB-PGBD3P0DP91 RPS15-207ENST00000591032 550 ntTSL 3 BASIC23.8■■□□□ 1.4
CSB-PGBD3P0DP91 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC23.8■■□□□ 1.4
CSB-PGBD3P0DP91 PGM5P2-202ENST00000637225 1043 ntBASIC23.8■■□□□ 1.4
CSB-PGBD3P0DP91 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC23.8■■□□□ 1.4
CSB-PGBD3P0DP91 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC23.8■■□□□ 1.4
CSB-PGBD3P0DP91 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CSB-PGBD3P0DP91 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CSB-PGBD3P0DP91 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC23.8■■□□□ 1.4
CSB-PGBD3P0DP91 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CSB-PGBD3P0DP91 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CSB-PGBD3P0DP91 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC23.8■■□□□ 1.4
CSB-PGBD3P0DP91 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
CSB-PGBD3P0DP91 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC23.79■■□□□ 1.4
CSB-PGBD3P0DP91 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CSB-PGBD3P0DP91 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CSB-PGBD3P0DP91 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CSB-PGBD3P0DP91 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
CSB-PGBD3P0DP91 LBH-203ENST00000404397 543 ntTSL 4 BASIC23.79■■□□□ 1.4
CSB-PGBD3P0DP91 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC23.79■■□□□ 1.4
CSB-PGBD3P0DP91 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC23.79■■□□□ 1.4
CSB-PGBD3P0DP91 COPE-211ENST00000600932 1144 ntTSL 5 BASIC23.79■■□□□ 1.4
CSB-PGBD3P0DP91 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC23.79■■□□□ 1.4
CSB-PGBD3P0DP91 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
CSB-PGBD3P0DP91 AC120498.9-201ENST00000339021 3867 ntBASIC23.79■■□□□ 1.4
CSB-PGBD3P0DP91 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC23.79■■□□□ 1.4
CSB-PGBD3P0DP91 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CSB-PGBD3P0DP91 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CSB-PGBD3P0DP91 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC23.79■■□□□ 1.4
CSB-PGBD3P0DP91 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC23.78■■□□□ 1.4
CSB-PGBD3P0DP91 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC23.78■■□□□ 1.4
CSB-PGBD3P0DP91 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
CSB-PGBD3P0DP91 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
CSB-PGBD3P0DP91 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC23.78■■□□□ 1.4
CSB-PGBD3P0DP91 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CSB-PGBD3P0DP91 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CSB-PGBD3P0DP91 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CSB-PGBD3P0DP91 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC23.78■■□□□ 1.4
CSB-PGBD3P0DP91 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC23.78■■□□□ 1.4
CSB-PGBD3P0DP91 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CSB-PGBD3P0DP91 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CSB-PGBD3P0DP91 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC23.78■■□□□ 1.4
CSB-PGBD3P0DP91 AC022898.2-201ENST00000616822 1312 ntBASIC23.78■■□□□ 1.4
CSB-PGBD3P0DP91 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC23.77■■□□□ 1.4
CSB-PGBD3P0DP91 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC23.77■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms