Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC33.11■■■□□ 2.897e-15■■□□□ 14
UPF1Q92900 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC28.87■■■□□ 2.217e-15■■□□□ 14
UPF1Q92900 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC24.85■■□□□ 1.577e-15■■□□□ 14
UPF1Q92900 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.417e-15■■□□□ 14
UPF1Q92900 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC22.46■■□□□ 1.197e-15■■□□□ 14
UPF1Q92900 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC18.7■□□□□ 0.587e-15■■□□□ 14
UPF1Q92900 CCND3-215ENST00000511642 2394 ntTSL 2 BASIC13.9□□□□□ -0.187e-15■■□□□ 14
UPF1Q92900 EIF4G1-237ENST00000485712 474 ntTSL 424.41■■□□□ 1.58e-8■■□□□ 14
UPF1Q92900 EIF4G1-227ENST00000455679 542 ntTSL 420.37■□□□□ 0.858e-8■■□□□ 14
UPF1Q92900 EIF4G1-208ENST00000413967 2808 ntTSL 220.05■□□□□ 0.88e-8■■□□□ 14
UPF1Q92900 EIF4G1-210ENST00000421110 2755 ntTSL 518.11■□□□□ 0.498e-8■■□□□ 14
UPF1Q92900 EIF4G1-214ENST00000427141 730 ntTSL 517.09■□□□□ 0.338e-8■■□□□ 14
UPF1Q92900 EIF4G1-226ENST00000450424 2658 ntTSL 517.04■□□□□ 0.328e-8■■□□□ 14
UPF1Q92900 EIF4G1-220ENST00000440448 578 ntTSL 415.54■□□□□ 0.088e-8■■□□□ 14
UPF1Q92900 EIF4G1-213ENST00000426123 2907 ntTSL 214.97□□□□□ -0.018e-8■■□□□ 14
UPF1Q92900 EIF4G1-223ENST00000444134 558 ntTSL 514.26□□□□□ -0.138e-8■■□□□ 14
UPF1Q92900 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC19.8■□□□□ 0.764e-13■■□□□ 14
UPF1Q92900 GSK3A-203ENST00000453535 1897 ntTSL 533.48■■■□□ 2.956e-7■■□□□ 13.9
UPF1Q92900 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC29.2■■■□□ 2.276e-7■■□□□ 13.9
UPF1Q92900 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC28.61■■■□□ 2.175e-7■■□□□ 13.9
UPF1Q92900 ZHX1-205ENST00000522595 1114 ntTSL 228.25■■■□□ 2.116e-6■■□□□ 13.9
UPF1Q92900 PEAR1-205ENST00000465101 980 ntTSL 228.09■■■□□ 2.096e-6■■□□□ 13.9
UPF1Q92900 ZHX1-C8orf76-202ENST00000622816 581 ntAPPRIS ALT2 TSL 426.9■■□□□ 1.96e-6■■□□□ 13.9
UPF1Q92900 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC23.33■■□□□ 1.336e-6■■□□□ 13.9
UPF1Q92900 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.256e-6■■□□□ 13.9
UPF1Q92900 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.235e-7■■□□□ 13.9
UPF1Q92900 P2RY11-202ENST00000471843 554 ntTSL 422.39■■□□□ 1.176e-6■■□□□ 13.9
UPF1Q92900 AGPAT3-214ENST00000481319 616 ntTSL 321.24■□□□□ 0.996e-6■■□□□ 13.9
UPF1Q92900 USP22-205ENST00000478443 1071 ntTSL 1 (best)20.02■□□□□ 0.88e-13■■□□□ 13.9
UPF1Q92900 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.776e-6■■□□□ 13.9
UPF1Q92900 AC005381.1-203ENST00000591920 569 ntTSL 518.25■□□□□ 0.511e-10■■□□□ 13.9
UPF1Q92900 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.476e-6■■□□□ 13.9
UPF1Q92900 MBD1-227ENST00000592060 1952 ntTSL 1 (best)17.95■□□□□ 0.466e-6■■□□□ 13.9
UPF1Q92900 FGF11-205ENST00000575398 990 ntTSL 2 BASIC17.2■□□□□ 0.346e-6■■□□□ 13.9
UPF1Q92900 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.236e-6■■□□□ 13.9
UPF1Q92900 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.26■□□□□ 0.195e-7■■□□□ 13.9
UPF1Q92900 ST6GALNAC1-209ENST00000590878 1311 ntTSL 1 (best)15.72■□□□□ 0.116e-6■■□□□ 13.9
UPF1Q92900 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC15.7■□□□□ 0.16e-6■■□□□ 13.9
UPF1Q92900 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.096e-6■■□□□ 13.9
UPF1Q92900 ST6GALNAC1-206ENST00000589813 567 ntTSL 415.4■□□□□ 0.066e-6■■□□□ 13.9
UPF1Q92900 AC005381.1-204ENST00000585697 599 ntTSL 3 BASIC15.39■□□□□ 0.051e-10■■□□□ 13.9
UPF1Q92900 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC15.2■□□□□ 0.024e-7■■□□□ 13.9
UPF1Q92900 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.036e-6■■□□□ 13.9
UPF1Q92900 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.046e-6■■□□□ 13.9
UPF1Q92900 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC14.16□□□□□ -0.146e-6■■□□□ 13.9
UPF1Q92900 ST6GALNAC1-202ENST00000359088 2321 ntTSL 1 (best)14.08□□□□□ -0.166e-6■■□□□ 13.9
UPF1Q92900 ZHX1-202ENST00000395571 5108 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.196e-6■■□□□ 13.9
UPF1Q92900 GNAL-206ENST00000585642 623 ntTSL 413.78□□□□□ -0.25e-7■■□□□ 13.9
UPF1Q92900 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.226e-6■■□□□ 13.9
UPF1Q92900 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.226e-6■■□□□ 13.9
UPF1Q92900 UNKL-207ENST00000403703 4281 ntTSL 1 (best)13.1□□□□□ -0.316e-6■■□□□ 13.9
UPF1Q92900 CHMP1B-201ENST00000526991 3054 ntAPPRIS P1 BASIC12.77□□□□□ -0.365e-7■■□□□ 13.9
UPF1Q92900 GNAL-203ENST00000423027 2255 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.375e-7■■□□□ 13.9
UPF1Q92900 ST6GALNAC1-211ENST00000592042 2657 ntTSL 1 (best)12.44□□□□□ -0.426e-6■■□□□ 13.9
UPF1Q92900 ZHX1-204ENST00000517516 780 ntTSL 312.17□□□□□ -0.466e-6■■□□□ 13.9
UPF1Q92900 TMEM135-207ENST00000531643 1319 ntTSL 1 (best)12.11□□□□□ -0.472e-8■■□□□ 13.9
UPF1Q92900 SH3BP2-203ENST00000442312 9211 ntAPPRIS ALT2 TSL 2 BASIC12.09□□□□□ -0.474e-7■■□□□ 13.9
UPF1Q92900 WDR37-201ENST00000263150 4462 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.526e-6■■□□□ 13.9
UPF1Q92900 ST6GALNAC1-201ENST00000156626 2570 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.536e-6■■□□□ 13.9
UPF1Q92900 WDR37-202ENST00000358220 4582 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.596e-6■■□□□ 13.9
UPF1Q92900 PHF8-204ENST00000357988 6024 ntAPPRIS ALT2 TSL 1 (best) BASIC11.12□□□□□ -0.636e-6■■□□□ 13.9
UPF1Q92900 TMEM135-205ENST00000528861 1146 ntTSL 311.1□□□□□ -0.632e-8■■□□□ 13.9
UPF1Q92900 ZHX1-206ENST00000522655 3357 ntAPPRIS P1 TSL 2 BASIC10.93□□□□□ -0.666e-6■■□□□ 13.9
UPF1Q92900 ISY1-202ENST00000393292 988 ntTSL 5 BASIC10.81□□□□□ -0.686e-6■■□□□ 13.9
UPF1Q92900 ISY1-206ENST00000485703 837 ntTSL 510.63□□□□□ -0.716e-6■■□□□ 13.9
UPF1Q92900 HBBP1-202ENST00000454892 455 ntTSL 2 BASIC10.55□□□□□ -0.721e-10■■□□□ 13.9
UPF1Q92900 FOXM1-201ENST00000342628 3475 ntTSL 1 (best) BASIC10.43□□□□□ -0.746e-6■■□□□ 13.9
UPF1Q92900 UNKL-216ENST00000562537 213 ntTSL 310.36□□□□□ -0.756e-6■■□□□ 13.9
UPF1Q92900 SH3BP2-201ENST00000356331 9211 ntAPPRIS P3 TSL 1 (best) BASIC10.35□□□□□ -0.754e-7■■□□□ 13.9
UPF1Q92900 FOXM1-206ENST00000536066 2518 ntTSL 1 (best)9.79□□□□□ -0.846e-6■■□□□ 13.9
UPF1Q92900 GNAL-208ENST00000590228 585 ntTSL 49.6□□□□□ -0.875e-7■■□□□ 13.9
UPF1Q92900 TMEM135-202ENST00000340353 3938 ntTSL 1 (best) BASIC9.24□□□□□ -0.932e-8■■□□□ 13.9
UPF1Q92900 CSTF2T-201ENST00000331173 4105 ntAPPRIS P1 BASIC9.23□□□□□ -0.936e-6■■□□□ 13.9
UPF1Q92900 TMEM135-201ENST00000305494 2433 ntAPPRIS P1 TSL 1 (best) BASIC9.22□□□□□ -0.932e-8■■□□□ 13.9
UPF1Q92900 GSK3A-202ENST00000398249 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC9□□□□□ -0.976e-7■■□□□ 13.9
UPF1Q92900 FOXM1-202ENST00000359843 3315 ntAPPRIS P4 TSL 1 (best) BASIC6.97□□□□□ -1.296e-6■■□□□ 13.9
UPF1Q92900 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.442e-8■■□□□ 13.9
UPF1Q92900 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.536e-6■■□□□ 13.9
UPF1Q92900 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.37□□□□□ -1.552e-8■■□□□ 13.9
UPF1Q92900 PDIA6-204ENST00000404824 2236 ntTSL 2 BASIC13.52□□□□□ -0.249e-11■■□□□ 13.9
UPF1Q92900 MBD3-211ENST00000592965 568 ntTSL 433.79■■■■□ 38e-9■■□□□ 13.9
UPF1Q92900 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC18.31■□□□□ 0.521e-6■■□□□ 13.9
UPF1Q92900 COPS7B-209ENST00000412922 1935 ntTSL 518.21■□□□□ 0.511e-6■■□□□ 13.9
UPF1Q92900 COPS7B-213ENST00000449174 668 ntTSL 317.35■□□□□ 0.371e-6■■□□□ 13.9
UPF1Q92900 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC17.24■□□□□ 0.351e-6■■□□□ 13.9
UPF1Q92900 COPS7B-221ENST00000488111 2381 ntTSL 1 (best)16.46■□□□□ 0.231e-6■■□□□ 13.9
UPF1Q92900 COPS7B-223ENST00000611614 2468 ntTSL 3 BASIC16.1■□□□□ 0.171e-6■■□□□ 13.9
UPF1Q92900 COPS7B-210ENST00000413197 2442 ntTSL 215.49■□□□□ 0.071e-6■■□□□ 13.9
UPF1Q92900 COPS7B-201ENST00000350033 2544 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.141e-6■■□□□ 13.9
UPF1Q92900 COPS7B-203ENST00000373608 2563 ntTSL 1 (best) BASIC14.04□□□□□ -0.161e-6■■□□□ 13.9
UPF1Q92900 COPS7B-217ENST00000461350 3299 ntTSL 212.75□□□□□ -0.371e-6■■□□□ 13.9
UPF1Q92900 GLE1-201ENST00000309971 3321 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.872e-6■■□□□ 13.9
UPF1Q92900 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.033e-38■■□□□ 13.9
UPF1Q92900 BRD8-219ENST00000472478 745 ntTSL 314.39□□□□□ -0.116e-11■■□□□ 13.9
UPF1Q92900 BRD8-203ENST00000402931 2982 ntTSL 5 BASIC8.01□□□□□ -1.136e-11■■□□□ 13.9
UPF1Q92900 BRD8-204ENST00000411594 2967 ntTSL 5 BASIC8.01□□□□□ -1.136e-11■■□□□ 13.9
UPF1Q92900 BRD8-202ENST00000254900 4388 ntAPPRIS P1 TSL 1 (best) BASIC7.92□□□□□ -1.146e-11■■□□□ 13.9
UPF1Q92900 BRD8-214ENST00000454473 3005 ntTSL 57.8□□□□□ -1.166e-11■■□□□ 13.9
UPF1Q92900 BRD8-201ENST00000230901 3198 ntTSL 1 (best) BASIC7.78□□□□□ -1.166e-11■■□□□ 13.9
UPF1Q92900 BRD8-211ENST00000441656 2899 ntTSL 57.47□□□□□ -1.216e-11■■□□□ 13.9
Retrieved 100 of 15,879 protein–RNA pairs in 95.3 ms