Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VRK3Q8IV63 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
VRK3Q8IV63 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VRK3Q8IV63 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VRK3Q8IV63 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VRK3Q8IV63 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC17.66■□□□□ 0.42
VRK3Q8IV63 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VRK3Q8IV63 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
VRK3Q8IV63 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VRK3Q8IV63 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
VRK3Q8IV63 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
VRK3Q8IV63 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
VRK3Q8IV63 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
VRK3Q8IV63 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VRK3Q8IV63 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.66■□□□□ 0.42
VRK3Q8IV63 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VRK3Q8IV63 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
VRK3Q8IV63 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC17.66■□□□□ 0.42
VRK3Q8IV63 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VRK3Q8IV63 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VRK3Q8IV63 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.66■□□□□ 0.42
VRK3Q8IV63 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VRK3Q8IV63 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VRK3Q8IV63 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
VRK3Q8IV63 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC17.65■□□□□ 0.42
VRK3Q8IV63 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.65■□□□□ 0.42
VRK3Q8IV63 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VRK3Q8IV63 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
VRK3Q8IV63 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
VRK3Q8IV63 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VRK3Q8IV63 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VRK3Q8IV63 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VRK3Q8IV63 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.65■□□□□ 0.42
VRK3Q8IV63 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.65■□□□□ 0.42
VRK3Q8IV63 TSPY12P-201ENST00000421279 868 ntBASIC17.65■□□□□ 0.42
VRK3Q8IV63 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
VRK3Q8IV63 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.65■□□□□ 0.42
VRK3Q8IV63 RNF146-204ENST00000476956 884 ntTSL 2 BASIC17.65■□□□□ 0.42
VRK3Q8IV63 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC17.65■□□□□ 0.42
VRK3Q8IV63 NT5C-211ENST00000582170 653 ntTSL 3 BASIC17.65■□□□□ 0.42
VRK3Q8IV63 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC17.65■□□□□ 0.42
VRK3Q8IV63 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
VRK3Q8IV63 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
VRK3Q8IV63 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
VRK3Q8IV63 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VRK3Q8IV63 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
VRK3Q8IV63 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
VRK3Q8IV63 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VRK3Q8IV63 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VRK3Q8IV63 IER3-202ENST00000376377 1350 ntBASIC17.65■□□□□ 0.42
VRK3Q8IV63 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
VRK3Q8IV63 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.42
VRK3Q8IV63 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.42
VRK3Q8IV63 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC17.64■□□□□ 0.42
VRK3Q8IV63 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
VRK3Q8IV63 AC068880.1-201ENST00000507289 2297 ntBASIC17.64■□□□□ 0.41
VRK3Q8IV63 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VRK3Q8IV63 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VRK3Q8IV63 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VRK3Q8IV63 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
VRK3Q8IV63 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.41
VRK3Q8IV63 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VRK3Q8IV63 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.64■□□□□ 0.41
VRK3Q8IV63 BAALC-202ENST00000306391 243 ntTSL 5 BASIC17.64■□□□□ 0.41
VRK3Q8IV63 BAALC-204ENST00000330955 222 ntTSL 5 BASIC17.64■□□□□ 0.41
VRK3Q8IV63 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VRK3Q8IV63 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VRK3Q8IV63 KRT18P65-201ENST00000439811 1286 ntBASIC17.64■□□□□ 0.41
VRK3Q8IV63 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
VRK3Q8IV63 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.64■□□□□ 0.41
VRK3Q8IV63 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VRK3Q8IV63 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
VRK3Q8IV63 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
VRK3Q8IV63 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
VRK3Q8IV63 NOC2LP2-201ENST00000407594 1944 ntBASIC17.64■□□□□ 0.41
VRK3Q8IV63 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
VRK3Q8IV63 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
VRK3Q8IV63 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VRK3Q8IV63 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC17.63■□□□□ 0.41
VRK3Q8IV63 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
VRK3Q8IV63 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.63■□□□□ 0.41
VRK3Q8IV63 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VRK3Q8IV63 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VRK3Q8IV63 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VRK3Q8IV63 AC067852.2-201ENST00000590513 2313 ntBASIC17.63■□□□□ 0.41
VRK3Q8IV63 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.63■□□□□ 0.41
VRK3Q8IV63 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VRK3Q8IV63 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VRK3Q8IV63 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
VRK3Q8IV63 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.63■□□□□ 0.41
VRK3Q8IV63 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC17.63■□□□□ 0.41
VRK3Q8IV63 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VRK3Q8IV63 TPM1-226ENST00000560959 925 ntTSL 2 BASIC17.63■□□□□ 0.41
VRK3Q8IV63 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC17.63■□□□□ 0.41
VRK3Q8IV63 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC17.63■□□□□ 0.41
VRK3Q8IV63 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.63■□□□□ 0.41
VRK3Q8IV63 HLA-DQB1-201ENST00000374943 1656 ntBASIC17.63■□□□□ 0.41
VRK3Q8IV63 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC17.63■□□□□ 0.41
VRK3Q8IV63 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
VRK3Q8IV63 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms