Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC21.28■■□□□ 1
RHBDL3P58872 AC122714.2-201ENST00000502787 707 ntBASIC21.28■■□□□ 1
RHBDL3P58872 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC21.28■■□□□ 1
RHBDL3P58872 PNMT-203ENST00000581428 677 ntTSL 2 BASIC21.28■■□□□ 1
RHBDL3P58872 AL139288.1-201ENST00000623748 933 ntBASIC21.28■■□□□ 1
RHBDL3P58872 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RHBDL3P58872 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC21.28■■□□□ 1
RHBDL3P58872 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC21.28■■□□□ 1
RHBDL3P58872 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC21.28■■□□□ 1
RHBDL3P58872 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RHBDL3P58872 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC21.28■■□□□ 1
RHBDL3P58872 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RHBDL3P58872 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC21.28■■□□□ 1
RHBDL3P58872 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC21.28■■□□□ 1
RHBDL3P58872 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC21.28■■□□□ 1
RHBDL3P58872 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RHBDL3P58872 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC21.27■■□□□ 1
RHBDL3P58872 PMPCAP1-201ENST00000508114 1576 ntBASIC21.27■■□□□ 1
RHBDL3P58872 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
RHBDL3P58872 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC21.27■■□□□ 1
RHBDL3P58872 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC21.27■■□□□ 1
RHBDL3P58872 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RHBDL3P58872 AC093909.1-201ENST00000504731 1122 ntBASIC21.27■■□□□ 1
RHBDL3P58872 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC21.27■■□□□ 1
RHBDL3P58872 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC21.27■■□□□ 1
RHBDL3P58872 AC012640.2-201ENST00000561606 901 ntBASIC21.27■■□□□ 1
RHBDL3P58872 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC21.27■■□□□ 1
RHBDL3P58872 AC106730.1-201ENST00000566722 1090 ntBASIC21.27■■□□□ 1
RHBDL3P58872 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC21.27■■□□□ 1
RHBDL3P58872 AD001527.2-201ENST00000622994 785 ntBASIC21.27■■□□□ 1
RHBDL3P58872 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
RHBDL3P58872 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RHBDL3P58872 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RHBDL3P58872 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RHBDL3P58872 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RHBDL3P58872 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
RHBDL3P58872 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC21.27■■□□□ 1
RHBDL3P58872 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC21.27■■□□□ 1
RHBDL3P58872 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
RHBDL3P58872 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC21.27■□□□□ 0.99
RHBDL3P58872 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC21.27■□□□□ 0.99
RHBDL3P58872 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■□□□□ 0.99
RHBDL3P58872 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC21.27■□□□□ 0.99
RHBDL3P58872 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
RHBDL3P58872 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
RHBDL3P58872 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RHBDL3P58872 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
RHBDL3P58872 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
RHBDL3P58872 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RHBDL3P58872 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RHBDL3P58872 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RHBDL3P58872 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RHBDL3P58872 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC21.26■□□□□ 0.99
RHBDL3P58872 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RHBDL3P58872 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
RHBDL3P58872 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RHBDL3P58872 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC21.26■□□□□ 0.99
RHBDL3P58872 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC21.26■□□□□ 0.99
RHBDL3P58872 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC21.26■□□□□ 0.99
RHBDL3P58872 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RHBDL3P58872 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RHBDL3P58872 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RHBDL3P58872 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
RHBDL3P58872 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
RHBDL3P58872 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RHBDL3P58872 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
RHBDL3P58872 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RHBDL3P58872 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC21.26■□□□□ 0.99
RHBDL3P58872 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RHBDL3P58872 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RHBDL3P58872 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC21.25■□□□□ 0.99
RHBDL3P58872 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RHBDL3P58872 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
RHBDL3P58872 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RHBDL3P58872 AC135776.1-201ENST00000319817 2481 ntBASIC21.25■□□□□ 0.99
RHBDL3P58872 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
RHBDL3P58872 CSF3-203ENST00000394148 622 ntTSL 3 BASIC21.25■□□□□ 0.99
RHBDL3P58872 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC21.25■□□□□ 0.99
RHBDL3P58872 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC21.25■□□□□ 0.99
RHBDL3P58872 PMS2P1-201ENST00000431037 1228 ntBASIC21.25■□□□□ 0.99
RHBDL3P58872 SRP19-202ENST00000445150 833 ntTSL 2 BASIC21.25■□□□□ 0.99
RHBDL3P58872 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC21.25■□□□□ 0.99
RHBDL3P58872 IGHV3-22-201ENST00000520721 359 ntBASIC21.25■□□□□ 0.99
RHBDL3P58872 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC21.25■□□□□ 0.99
RHBDL3P58872 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RHBDL3P58872 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC21.25■□□□□ 0.99
RHBDL3P58872 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
RHBDL3P58872 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RHBDL3P58872 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RHBDL3P58872 TNXA-203ENST00000507684 2038 ntBASIC21.24■□□□□ 0.99
RHBDL3P58872 POR-209ENST00000439269 1858 ntTSL 2 BASIC21.24■□□□□ 0.99
RHBDL3P58872 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RHBDL3P58872 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RHBDL3P58872 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
RHBDL3P58872 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
RHBDL3P58872 RAB17-203ENST00000409576 466 ntTSL 3 BASIC21.24■□□□□ 0.99
RHBDL3P58872 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC21.24■□□□□ 0.99
RHBDL3P58872 RPL13AP23-201ENST00000480739 586 ntBASIC21.24■□□□□ 0.99
RHBDL3P58872 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
RHBDL3P58872 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms